Stochastic modeling and numerical simulation of gene regulatory networks with protein bursting
DOI10.1016/J.JTBI.2017.03.017zbMATH Open1370.92061OpenAlexW2598638843WikidataQ38877872 ScholiaQ38877872MaRDI QIDQ2404005FDOQ2404005
Authors: Manuel Pájaro, Antonio A. Alonso, Irene Otero-Muras, Carlos Vázquez 
Publication date: 12 September 2017
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2017.03.017
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Biochemistry, molecular biology (92C40) Systems biology, networks (92C42) Applications of stochastic analysis (to PDEs, etc.) (60H30)
Cites Work
- Ordinary differential equations. An introduction to nonlinear analysis. Transl. from the German by Gerhard Metzen
- An introduction to continuum mechanics
- Numerical Methods for Convection-Dominated Diffusion Problems Based on Combining the Method of Characteristics with Finite Element or Finite Difference Procedures
- MATCONT
- On the transport-diffusion algorithm and its applications to the Navier-Stokes equations
- Title not available (Why is that?)
- Hybrid Stochastic--Deterministic Solution of the Chemical Master Equation
- Method of conditional moments (MCM) for the chemical master equation
- Stochastic methods. A handbook for the natural and social sciences
- Finite elements and characteristics for some parabolic-hyperbolic problems
- Molecular distributions in gene regulatory dynamics
- On reduced models for the chemical master equation
- Fokker–Planck approximation of the master equation in molecular biology
- Solving chemical master equations by adaptive wavelet compression
- Computing the moments of high dimensional solutions of the master equation
- Influence of gene copy number on self-regulated gene expression
- Effects of jump-diffusion models for the house price dynamics in the pricing of fixed-rate mortgages, insurance and coinsurance
- Pricing pension plans under jump-diffusion models for the salary
Cited In (13)
- Algebraic expressions of conditional expectations in gene regulatory networks
- Exponential equilibration of genetic circuits using entropy methods
- Exact and WKB-approximate distributions in a gene expression model with feedback in burst frequency, burst size, and protein stability
- Switches in a genetic regulatory system under multiplicative non-Gaussian noise
- A kinetic finite volume discretization of the multidimensional PIDE model for gene regulatory networks
- High cooperativity in negative feedback can amplify noisy gene expression
- Application of the Goodwin model to autoregulatory feedback for stochastic gene expression
- Bursting and complex oscillatory patterns in a gene regulatory network model
- Deep learning approximations for non-local nonlinear PDEs with Neumann boundary conditions
- Numerical analysis of a method for a partial integro-differential equation model in regulatory gene networks
- Steady-state fluctuations of a genetic feedback loop with fluctuating rate parameters using the unified colored noise approximation
- Impacts of Multiple Time Delays on a Gene Regulatory Network Mediated by Small Noncoding RNA
- Stochastic hybrid models of gene regulatory networks -- a PDE approach
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