Jump-Diffusion Approximation of Stochastic Reaction Dynamics: Error Bounds and Algorithms
DOI10.1137/140983471zbMath1339.60088arXiv1409.4303OpenAlexW2963834876MaRDI QIDQ3459660
Arnab Ganguly, Heinz Koeppl, Derya Altıntan
Publication date: 11 January 2016
Published in: Multiscale Modeling & Simulation (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/1409.4303
Markov chainsdiffusion approximationstochastic differential equationsjump-diffusion processesbiochemical reaction networksmultiscale networks
Stochastic ordinary differential equations (aspects of stochastic analysis) (60H10) Applications of stochastic analysis (to PDEs, etc.) (60H30) Biochemistry, molecular biology (92C40) Diffusion processes (60J60) Computational methods for stochastic equations (aspects of stochastic analysis) (60H35) Numerical solutions to stochastic differential and integral equations (65C30) Continuous-time Markov processes on discrete state spaces (60J27) Applications of continuous-time Markov processes on discrete state spaces (60J28)
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- Method of conditional moments (MCM) for the chemical master equation
- Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
- Error analysis of tau-leap simulation methods
- Asymptotic analysis of multiscale approximations to reaction networks
- Separation of time-scales and model reduction for stochastic reaction networks
- Central limit theorems and diffusion approximations for multiscale Markov chain models
- Hybrid method for the chemical master equation
- On Reduced Models for the Chemical Master Equation
- Multilevel Monte Carlo for Continuous Time Markov Chains, with Applications in Biochemical Kinetics
- Solving Ordinary Differential Equations I
- Analysis of Explicit Tau-Leaping Schemes for Simulating Chemically Reacting Systems
- Error Bound for Piecewise Deterministic Processes Modeling Stochastic Reaction Systems
- Hybrid Stochastic--Deterministic Solution of the Chemical Master Equation
- Adaptive simulation of hybrid stochastic and deterministic models for biochemical systems
- Consistency and Stability of Tau-Leaping Schemes for Chemical Reaction Systems
- High strong order explicit Runge-Kutta methods for stochastic ordinary differential equations