Multiscale stochastic reaction-diffusion algorithms combining Markov chain models with stochastic partial differential equations
From MaRDI portal
Publication:2325580
Markov chainstochastic partial differential equationsmultiscale modellingchemical reaction networksGillespie algorithmstochastic reaction-diffusion systems
Applications of continuous-time Markov processes on discrete state spaces (60J28) Numerical analysis or methods applied to Markov chains (65C40) Systems biology, networks (92C42) PDEs with randomness, stochastic partial differential equations (35R60) Computational methods for problems pertaining to biology (92-08) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)
Recommendations
- Multiscale reaction-diffusion algorithms: PDE-assisted Brownian dynamics
- Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
- An adaptive algorithm for simulation of stochastic reaction-diffusion processes
- Multiscale stochastic simulations of chemical reactions with regulated scale separation
- Hybrid approaches for multiple-species stochastic reaction-diffusion models
Cites work
- scientific article; zbMATH DE number 3581390 (Why is no real title available?)
- A new method for choosing the computational cell in stochastic reaction-diffusion systems
- A stochastic analysis of first-order reaction networks
- ADM-CLE approach for detecting slow variables in continuous time Markov chains and dynamic data
- Adaptive finite element method assisted by stochastic simulation of chemical systems
- Algorithm refinement for stochastic partial differential equations. I: Linear diffusion.
- Algorithm refinement for stochastic partial differential equations. II. correlated systems
- An adaptive algorithm for simulation of stochastic reaction-diffusion processes
- Analysis of a stochastic chemical system close to a SNIPER bifurcation of its mean-field model
- Central limit theorems and diffusion approximations for multiscale Markov chain models
- Convergence of methods for coupling of microscopic and mesoscopic reaction-diffusion simulations
- Coupling all-atom molecular dynamics simulations of ions in water with Brownian dynamics
- Derivation of stochastic partial differential equations for reaction-diffusion processes
- Error analysis of diffusion approximation methods for multiscale systems in reaction kinetics
- From molecular dynamics to Brownian dynamics
- Handbook of stochastic methods for physics, chemistry and the natural sciences.
- Hybrid approaches for multiple-species stochastic reaction-diffusion models
- Hybrid framework for the simulation of stochastic chemical kinetics
- Hybrid stochastic simulations of intracellular reaction-diffusion systems
- Incorporating Diffusion in Complex Geometries into Stochastic Chemical Kinetics Simulations
- Jump-Diffusion Approximation of Stochastic Reaction Dynamics: Error Bounds and Algorithms
- Multiscale reaction-diffusion algorithms: PDE-assisted Brownian dynamics
- Multiscale stochastic reaction-diffusion modeling: application to actin dynamics in filopodia
- Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
- On the use of reverse Brownian motion to accelerate hybrid simulations
- Particle-based multiscale modeling of calcium puff dynamics
- Quasi-steady-state approximations derived from the stochastic model of enzyme kinetics
- Reduction for stochastic biochemical reaction networks with multiscale conservations
- Separation of time-scales and model reduction for stochastic reaction networks
- Simulation of stochastic reaction-diffusion processes on unstructured meshes
- Spatially adaptive stochastic numerical methods for intrinsic fluctuations in reaction-diffusion systems
- Stochastic analysis of reaction-diffusion processes
- Stochastic simulation of coupled reaction-diffusion processes
- Strong approximation theorems for density dependent Markov chains
Cited in
(13)- Multiscale reaction-diffusion algorithms: PDE-assisted Brownian dynamics
- Stochastic simulation of biochemical systems: in memory of Dan T. Gillespie's contributions
- A hybrid method for micro-mesoscopic stochastic simulation of reaction-diffusion systems
- Convergence of methods for coupling of microscopic and mesoscopic reaction-diffusion simulations
- Extreme diffusion with point-sink killing fields: application to fast calcium signaling at synapses
- Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
- Effects of different discretisations of the Laplacian upon stochastic simulations of reaction-diffusion systems on both static and growing domains
- Hybrid approaches for multiple-species stochastic reaction-diffusion models
- Multiscale stochastic reaction-diffusion modeling: application to actin dynamics in filopodia
- On the use of reverse Brownian motion to accelerate hybrid simulations
- Multi-grid reaction-diffusion master equation: applications to morphogen gradient modelling
- Efficient stochastic simulation of simultaneous reaction and diffusion in a gas-liquid interface
- Analysis of the two-regime method on square meshes
This page was built for publication: Multiscale stochastic reaction-diffusion algorithms combining Markov chain models with stochastic partial differential equations
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2325580)
