Multiscale stochastic reaction-diffusion algorithms combining Markov chain models with stochastic partial differential equations
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Publication:2325580
chemical reaction networksGillespie algorithmMarkov chainmultiscale modellingstochastic partial differential equationsstochastic reaction-diffusion systems
PDEs with randomness, stochastic partial differential equations (35R60) Applications of continuous-time Markov processes on discrete state spaces (60J28) Numerical analysis or methods applied to Markov chains (65C40) Computational methods for problems pertaining to biology (92-08) Systems biology, networks (92C42) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)
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Cites work
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- scientific article; zbMATH DE number 3581390 (Why is no real title available?)
- Hybrid approaches for multiple-species stochastic reaction-diffusion models
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- Multiscale reaction-diffusion algorithms: PDE-assisted Brownian dynamics
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Cited in
(13)- On the use of reverse Brownian motion to accelerate hybrid simulations
- Effects of different discretisations of the Laplacian upon stochastic simulations of reaction-diffusion systems on both static and growing domains
- Stochastic simulation of biochemical systems: in memory of Dan T. Gillespie's contributions
- A hybrid method for micro-mesoscopic stochastic simulation of reaction-diffusion systems
- Multiscale reaction-diffusion algorithms: PDE-assisted Brownian dynamics
- Analysis of the two-regime method on square meshes
- Efficient stochastic simulation of simultaneous reaction and diffusion in a gas-liquid interface
- Multiscale stochastic reaction-diffusion modeling: application to actin dynamics in filopodia
- Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
- Extreme diffusion with point-sink killing fields: application to fast calcium signaling at synapses
- Multi-grid reaction-diffusion master equation: applications to morphogen gradient modelling
- Convergence of methods for coupling of microscopic and mesoscopic reaction-diffusion simulations
- Hybrid approaches for multiple-species stochastic reaction-diffusion models
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