STEPS
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Cited in
(34)- STEPS
- Multiscale modeling of diffusion in a crowded environment
- OptiML
- URDME
- STOCHSIMGPU
- An unstructured mesh convergent reaction-diffusion master equation for reversible reactions
- A critical comparison of rejection-based algorithms for simulation of large biochemical reaction networks
- Multiscale stochastic reaction-diffusion algorithms combining Markov chain models with stochastic partial differential equations
- SESSL
- A hybrid method for micro-mesoscopic stochastic simulation of reaction-diffusion systems
- Simulation of stochastic diffusion via first exit times
- SBMLsimulator
- SakerGrid
- PySB
- Mesoscopic modeling of stochastic reaction-diffusion kinetics in the subdiffusive regime
- PyURDME
- MOLNs
- ReaDDy
- HRSSA
- MesoRD
- Parsec
- GTW
- XTW
- A discrete stochastic formulation for reversible bimolecular reactions via diffusion encounter
- Analysis and design of jump coefficients in discrete stochastic diffusion models
- HSimulator
- Smoldyn
- Multiscale Simulation of Stochastic Reaction-Diffusion Networks
- Multiscale stochastic reaction-diffusion modeling: application to actin dynamics in filopodia
- Stochastic reaction-diffusion processes with embedded lower-dimensional structures
- A comparison of bimolecular reaction models for stochastic reaction-diffusion systems
- SESSL
- Multithreaded stochastic PDES for reactions and diffusions in neurons
- Stochastic diffusion processes on Cartesian meshes
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