Smoldyn
From MaRDI portal
swMATH23962MaRDI QIDQ35723FDOQ35723
Author name not available (Why is that?)
Official website: http://www.smoldyn.org/
Cited In (43)
- Particle-based multiscale modeling of calcium puff dynamics
- Bayesian learning of effective chemical master equations in crowded intracellular conditions
- Accurate Particle-Based Reaction Algorithms for Fixed Timestep Simulators
- Multiscale modeling of diffusion in a crowded environment
- Multiscale Simulation of Stochastic Reaction-Diffusion Networks
- Convergence of methods for coupling of microscopic and mesoscopic reaction-diffusion simulations
- Multithreaded stochastic PDES for reactions and diffusions in neurons
- Diffusion-controlled reactions modeling in Geant4-DNA
- Sequestration of CaMKII in dendritic spines in silico
- Spatiotemporal maps of CaMKII in dendritic spines
- Reactive boundary conditions as limits of interaction potentials for Brownian and Langevin dynamics
- Multiscale stochastic reaction-diffusion algorithms combining Markov chain models with stochastic partial differential equations
- Stochastic reaction-diffusion processes with embedded lower-dimensional structures
- Smoluchowski Reaction Kinetics for Reactions of Any Order
- MCELL
- URDME
- STOCHSIMGPU
- LBS
- PySB
- STEPS
- MOLNs
- PyURDME
- ReaDDy
- Executable biochemical space for specification and analysis of biochemical systems
- Simulation of stochastic diffusion via first exit times
- Comparative study of metaheuristics for the curve-fitting problem: modeling neurotransmitter diffusion and synaptic receptor activation
- iNA
- MesoRD
- PARTRAC
- GTW
- NeuroMorpho
- Parsec
- NFsim
- XTW
- Tyche
- BioSimulator.jl
- Cell++
- Flexible single molecule simulation of reaction-diffusion processes
- rxncon
- Analysis and design of jump coefficients in discrete stochastic diffusion models
- Coupling particle-based reaction-diffusion simulations with reservoirs mediated by reaction-diffusion PDEs
- Spatial stochastic intracellular kinetics: a review of modelling approaches
- Coarse-graining molecular dynamics: stochastic models with non-Gaussian force distributions
This page was built for software: Smoldyn
