Spatial stochastic intracellular kinetics: a review of modelling approaches
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Publication:2325568
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Cites work
- A chemical approach to designing Turing patterns in reaction-diffusion systems.
- A comparison of bimolecular reaction models for stochastic reaction-diffusion systems
- A guide to first-passage processes
- A multiple time interval finite state projection algorithm for the solution to the chemical master equation
- A new method for choosing the computational cell in stochastic reaction-diffusion systems
- A stochastic analysis of first-order reaction networks
- Adaptive mesh refinement for stochastic reaction-diffusion processes
- Analysis and design of jump coefficients in discrete stochastic diffusion models
- Analysis of Brownian dynamics simulations of reversible bimolecular reactions
- Analysis of the two-regime method on square meshes
- Approximate Moment Dynamics for Chemically Reacting Systems
- Approximation and inference methods for stochastic biochemical kinetics -- a tutorial review
- Asymptotic analysis of multiscale approximations to reaction networks
- From microscopic to macroscopic descriptions of cell migration on growing domains
- From molecular dynamics to Brownian dynamics
- scientific article; zbMATH DE number 3119871 (Why is no real title available?)
- scientific article; zbMATH DE number 3913407 (Why is no real title available?)
- scientific article; zbMATH DE number 43865 (Why is no real title available?)
- scientific article; zbMATH DE number 44637 (Why is no real title available?)
- scientific article; zbMATH DE number 3466895 (Why is no real title available?)
- scientific article; zbMATH DE number 3560401 (Why is no real title available?)
- scientific article; zbMATH DE number 1082719 (Why is no real title available?)
- scientific article; zbMATH DE number 3273551 (Why is no real title available?)
- scientific article; zbMATH DE number 3283153 (Why is no real title available?)
- scientific article; zbMATH DE number 3061585 (Why is no real title available?)
- Incorporating Diffusion in Complex Geometries into Stochastic Chemical Kinetics Simulations
- Limit theorems for sequences of jump Markov processes approximating ordinary differential processes
- Model reduction for stochastic reaction systems
- Modeling biomolecular networks in cells. Structures and dynamics
- Multiscale modeling of diffusion in a crowded environment
- Numerical Methods for Ordinary Differential Equations
- Relationship between the reaction–diffusion master equation and particle tracking models
- Simple Brownian diffusion. An introduction to the standard theoretical models
- Simulation of stochastic diffusion via first exit times
- Simulation of stochastic reaction-diffusion processes on unstructured meshes
- Solving the chemical master equation for monomolecular reaction systems analytically
- Stochastic diffusion processes on Cartesian meshes
- Stochastic processes in physics and chemistry.
- Stochastic reaction-diffusion kinetics in the microscopic limit
- Stochastic simulation of coupled reaction-diffusion processes
- The chemical basis of morphogenesis
- The random walk's guide to anomalous diffusion: A fractional dynamics approach
- The reaction-diffusion master equation as an asymptotic approximation of diffusion to a small target
- The time dependent propensity function for acceleration of spatial stochastic simulation of reaction-diffusion systems
Cited in
(12)- Invasiveness of a growth-migration system in a two-dimensional percolation cluster: a stochastic mathematical approach
- Stochastic simulation of biochemical systems: in memory of Dan T. Gillespie's contributions
- A probabilistic framework for particle-based reaction-diffusion dynamics using classical Fock space representations
- Spice simulation of intracellular transport: Free diffusion
- A comparison of bimolecular reaction models for stochastic reaction-diffusion systems
- Reversible Doi and Smoluchowski kinetics for high-order reactions
- Stochastic reaction-diffusion kinetics in the microscopic limit
- Chemical diffusion master equation: Formulations of reaction–diffusion processes on the molecular level
- Chemical kinetics and diffusion approach: the history of the Klein-Kramers equation
- A spatial measure-valued model for chemical reaction networks in heterogeneous systems
- Efficient and scalable prediction of stochastic reaction-diffusion processes using graph neural networks
- Particle-based simulation of non-elementary bimolecular kinetics
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