PySB
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Cited in
(48)- Thermodynamic graph-rewriting
- Mesoscopic modeling of stochastic reaction-diffusion kinetics in the subdiffusive regime
- Chromar, a rule-based language of parameterised objects
- Multiscale Simulation of Stochastic Reaction-Diffusion Networks
- Compact representation of photosynthesis dynamics by rule-based models
- Chromar, a language of parameterised agents
- APL
- SNOOPY
- OptiML
- StochKit
- BioNetGen
- BIOCHAM
- URDME
- SESSL
- COPASI
- LBS
- libSBML
- SakerGrid
- SBMLsimulator
- STEPS
- StochKit2
- MOLNs
- PyURDME
- Galaxy
- pa-ode-gen
- MesoRD
- NFsim
- Smoldyn
- BioSimulator.jl
- KaSim
- VCell
- RuleBender
- PyCont
- Moment semantics for reversible rule-based systems
- Executable biochemical space for specification and analysis of biochemical systems
- SESSL
- BasiCO
- MobsPy
- eBCSgen
- pyModelChecking
- rxncon
- Dynamical Systems Toolbox
- MobsPy: a meta-species language for chemical reaction networks
- iBioSim
- Computational software
- eBCSgen 2.0: modelling and analysis of regulated rule-based systems
- BSim
- Chromar
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