Compact representation of photosynthesis dynamics by rule-based models

DOI10.1016/j.entcs.2015.06.008zbMath1352.92095arXiv1410.3632OpenAlexW1866617045WikidataQ113317776 ScholiaQ113317776MaRDI QIDQ2520664

David Šafránek, J. Nižnan, Luboš Brim

Publication date: 16 December 2016

Full work available at URL: https://arxiv.org/abs/1410.3632

zbMATH Keywords

databasesimulationbiological modelssystems biologymodel annotation

Mathematics Subject Classification ID

Plant biology (92C80) Systems biology, networks (92C42)

Related Items (2)

Formal biochemical space with semantics in Kappa and BNGL ⋮ Compact representation of photosynthesis dynamics by rule-based models

Uses Software

• PySB
• RuleBender

Cites Work

• On the approaches applied in formulation of a kinetic model of photosystem II: different approaches lead to different simulations of the chlorophyll \textit{a} fluorescence transients
• Formal molecular biology
• Compact representation of photosynthesis dynamics by rule-based models
• Combining Model Reductions
• Abstract Interpretation of Cellular Signalling Networks

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