NFsim
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Cited in
(29)- LumpingPositiviser
- Interpretable exact linear reductions via positivity
- Analysis of Fn14-NF-\(\kappa\)B signaling response dynamics using a mechanistic model
- Symbolic computation of differential equivalences
- Exact linear reduction for rational dynamical systems
- A group theoretic approach to model comparison with simplicial representations
- Cooperative assembly systems
- Simulation neurotechnologies for advancing brain research: parallelizing large networks in NEURON
- Bio-PEPA
- BioNetGen
- LBS
- Computational modelling of the kinetic tile assembly model using a rule-based approach
- ERODE
- kTAM
- Xtile
- Smoldyn
- PyNEST
- STOCHSIM
- KappaTools
- RuleBender
- Spatkin
- TRuML
- Incremental update for graph rewriting
- Executable biochemical space for specification and analysis of biochemical systems
- A syntactic abstraction for rule-based languages with binding
- Generalizing Gillespie's direct method to enable network-free simulations
- Mathematical models for immunology: current state of the art and future research directions
- rxncon
- CLUE
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