Diffusion-controlled reactions modeling in Geant4-DNA

DOI10.1016/J.JCP.2014.06.011MaRDI QIDQ728637zbMATHOpenAlexWikidataFDO

Authors D. Kharzeev

Publication date 20 December 2016

Published in Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jcp.2014.06.011

zbMATH Keywords

Fokker-Planck equationBrownian dynamicsBrownian bridgeradiation chemistrychemical kinetics simulationdynamical time stepsGeant4-DNAk-d treeradiobiologyradiolysisSmoluchowski diffusion equation

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Classical flows, reactions, etc. in chemistry (92E20)

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Cites work

• A quasistationary analysis of a stochastic chemical reaction: Keizer's paradox
• An Algorithm for Finding Best Matches in Logarithmic Expected Time
• Computational geometry. Algorithms and applications.
• Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces
• The Fokker-Planck equation. Methods of solutions and applications.

Cited in

(4)

• scientific article; zbMATH DE number 4032746 (Why is no real title available?)
• Random sampling of the Green's functions for reversible reactions with an intermediate state
• On the Green's function of the partially diffusion-controlled reversible ABCD reaction for radiation chemistry codes
• Computationally-efficient stochastic cluster dynamics method for modeling damage accumulation in irradiated materials

Describes a project that uses

Uses Software

• GEANT4
• MCELL
• E-CELL
• PARTRAC
• Smoldyn

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