Incorporating Diffusion in Complex Geometries into Stochastic Chemical Kinetics Simulations

DOI10.1137/040605060zbMath1109.65008OpenAlexW1981132987WikidataQ56563841 ScholiaQ56563841MaRDI QIDQ5470412

Samuel A. Isaacson, Charles S. Peskin

Publication date: 30 May 2006

Published in: SIAM Journal on Scientific Computing (Search for Journal in Brave)

Full work available at URL: https://semanticscholar.org/paper/09609d5e648979173eedfa70697028f15b0000dc

zbMATH Keywords

convergencefinite difference methodnumerical examplescomplex geometryreaction-diffusion equationstochastic chemical kineticsembedded boundary methodnuclear membrane transport

Mathematics Subject Classification ID

Reaction-diffusion equations (35K57) Biochemistry, molecular biology (92C40) Finite difference methods for initial value and initial-boundary value problems involving PDEs (65M06) Stochastic partial differential equations (aspects of stochastic analysis) (60H15) Computational methods for stochastic equations (aspects of stochastic analysis) (60H35) Numerical solutions to stochastic differential and integral equations (65C30) Chemical kinetics in thermodynamics and heat transfer (80A30) Finite difference methods applied to problems in thermodynamics and heat transfer (80M20)

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