A reduction method for multiple time scale stochastic reaction networks
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stochastic simulationchemical master equationstochastic reaction-diffusionmultiple time scale analysisenzyme-substrate model
Stochastic partial differential equations (aspects of stochastic analysis) (60H15) Stochastic ordinary differential equations (aspects of stochastic analysis) (60H10) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Classical flows, reactions, etc. in chemistry (92E20)
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Cites work
- scientific article; zbMATH DE number 1350309 (Why is no real title available?)
- scientific article; zbMATH DE number 3806623 (Why is no real title available?)
- scientific article; zbMATH DE number 3273551 (Why is no real title available?)
- A stochastic analysis of first-order reaction networks
- Analysis of multiscale methods for stochastic differential equations
- Incorporating Diffusion in Complex Geometries into Stochastic Chemical Kinetics Simulations
- Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
- Nested stochastic simulation algorithms for chemical kinetic systems with multiple time scales
- Stochastic approach to chemical kinetics
Cited in
(34)- Spectral representation and reduced order modeling of the dynamics of stochastic reaction networks via adaptive data partitioning
- Averaging Methods for Stochastic Dynamics of Complex Reaction Networks: Description of Multiscale Couplings
- Layered decomposition for the model order reduction of timescale separated biochemical reaction networks
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- A large-scale assessment of exact lumping of quantitative models in the biomodels repository
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- A reduction method for multiple time scale stochastic reaction networks with non-unique equilibrium probability
- Perturbation and truncation of probability generating function methods for stiff chemical reactions
- Bistable stochastic biochemical networks: highly specific systems with few chemicals
- Phase reduction of stochastic biochemical oscillators
- Asymptotic analysis of multiscale approximations to reaction networks
- Quantum techniques for reaction networks
- Individual Molecules Dynamics in Reaction Network Models
- A multi-time-scale analysis of chemical reaction networks. I: Deterministic systems
- Fast reactions with non-interacting species in stochastic reaction networks
- Optimization problems in chemical reactions using continuous-time Markov chains
- Algorithmic reduction of biological networks with multiple time scales
- Dimensionality reduction via path integration for computing mRNA distributions
- Adiabatic reduction of a model of stochastic gene expression with jump Markov process
- Data-driven, variational model reduction of high-dimensional reaction networks
- A numerical characteristic method for probability generating functions on stochastic first-order reaction networks
- A large-scale assessment of exact model reduction in the biomodels repository
- Structured Projection-Based Model Reduction With Application to Stochastic Biochemical Networks
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- Quasi product form approximation for Markov models of reaction networks
- Reduction for stochastic biochemical reaction networks with multiscale conservations
- Analysis of the Multiplane Method for Stochastic Simulations of Reaction Networks with Fluctuations
- Model reduction of multi-scale chemical Langevin equations
- Stochastic methods for epidemic models: an application to the 2009 H1N1 influenza outbreak in Korea
- Stochastic reduction method for biological chemical kinetics using time-scale separation
- Multistage homotopy perturbation method for nonlinear reaction networks
- Exactly reduced chemical master equations
- Accuracy of multiscale reduction for stochastic reaction systems
- Bistable stochastic biochemical networks: large chemical networks and systems with many molecules
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