Nested stochastic simulation algorithms for chemical kinetic systems with multiple time scales
From MaRDI portal
(Redirected from Publication:870533)
Recommendations
- Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
- Multiscale stochastic simulations of chemical reactions with regulated scale separation
- Boosted hybrid method for solving chemical reaction systems with multiple scales in time and population size
- Slow-scale tau-leaping method
- Strong convergence and speed up of nested stochastic simulation algorithm
Cites work
- scientific article; zbMATH DE number 3692372 (Why is no real title available?)
- scientific article; zbMATH DE number 50395 (Why is no real title available?)
- scientific article; zbMATH DE number 3638921 (Why is no real title available?)
- A limit theorem for perturbed operator semigroups with applications to random evolutions
- Analysis of multiscale methods for stochastic differential equations
- Constructing asymptotic series for probability distributions of Markov chains with weak and strong interactions
- Heterogeneous multiscale methods for stiff ordinary differential equations
- Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
- NOTE ON THE SIMPLE COLLISION THEORY OF BIMOLECULAR REACTIONS
- Numerical techniques for multi-scale dynamical systems with stochastic effects
- On Stochastic Processes Defined by Differential Equations with a Small Parameter
- Stability of Markovian processes I: criteria for discrete-time Chains
Cited in
(48)- Accelerated stochastic simulation algorithm for coupled chemical reactions with delays
- Effective dynamics for a kinetic Monte-Carlo model with slow and fast time scales
- Boosted hybrid method for solving chemical reaction systems with multiple scales in time and population size
- Sparse grids and hybrid methods for the chemical master equation
- Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
- Transport map accelerated adaptive importance sampling, and application to inverse problems arising from multiscale stochastic reaction networks
- Discovery of slow variables in a class of multiscale stochastic systems via neural networks
- Slow-scale tau-leaping method
- Stochastic filtering for multiscale stochastic reaction networks based on hybrid approximations
- Averaging of a Stochastic Slow-Fast Model for Population Dynamics: Application to the Development of Ovarian Follicles
- The linear noise approximation for spatially dependent biochemical networks
- Reliable kinetic Monte Carlo simulation based on random set sampling
- Computational identification of irreducible state-spaces for stochastic reaction networks
- Separation of time-scales and model reduction for stochastic reaction networks
- Estimation of parameter sensitivities for stochastic reaction networks using tau-leap simulations
- Modeling fast diffusion processes in time integration of stiff stochastic differential equations
- Constrained approximation of effective generators for multiscale stochastic reaction networks and application to conditioned path sampling
- A numerical scheme for optimal transition paths of stochastic chemical kinetic systems
- An adaptive algorithm for simulation of stochastic reaction-diffusion processes
- Coupling sample paths to the thermodynamic limit in Monte Carlo estimators with applications to gene expression
- Strong convergence and speed up of nested stochastic simulation algorithm
- Strong convergence of multi-scale stochastic differential equations with a full dependence
- Approximation and inference methods for stochastic biochemical kinetics -- a tutorial review
- scientific article; zbMATH DE number 5545219 (Why is no real title available?)
- Multiscale stochastic simulations of chemical reactions with regulated scale separation
- Hybrid method for the chemical master equation
- A mathematical and computational approach for integrating the major sources of cell population heterogeneity
- Scaling limits of spatial compartment models for chemical reaction networks
- Stochastic simulation of the cell cycle model for budding yeast
- Numerical methods for stochastic simulation: when stochastic integration meets geometric numerical integration
- Sensitivity analysis for multiscale stochastic reaction networks using hybrid approximations
- Slow-scale split-step tau-leap method for stiff stochastic chemical systems
- Stochastic reduction method for biological chemical kinetics using time-scale separation
- IMPLICIT SIMULATION METHODS FOR STOCHASTIC CHEMICAL KINETICS
- Variational integrators for electric circuits
- A hierarchy of approximations of the master equation scaled by a size parameter
- Product-form stationary distributions for deficiency zero networks with non-mass action kinetics
- Adaptive time-stepping using control theory for the chemical Langevin equation
- Stationary Averaging for Multiscale Continuous Time Markov Chains Using Parallel Replica Dynamics
- Hybrid discrete/continuum algorithms for stochastic reaction networks
- Multiscale Simulation of Stochastic Reaction-Diffusion Networks
- A geometric analysis of fast-slow models for stochastic gene expression
- Markovian dynamics on complex reaction networks
- A dimer-type saddle search algorithm with preconditioning and linesearch
- A reduction method for multiple time scale stochastic reaction networks
- A numerical characteristic method for probability generating functions on stochastic first-order reaction networks
- Semantics and efficient simulation algorithms of an expressive multilevel modeling language
- Preconditioned Bayesian regression for stochastic chemical kinetics
This page was built for publication: Nested stochastic simulation algorithms for chemical kinetic systems with multiple time scales
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q870533)
