A hierarchy of approximations of the master equation scaled by a size parameter
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algorithmsnumerical exampleserror estimatespopulation dynamicsmolecular biologyMaster equationLinear noise approximationmigration of peopleMoment equationsReaction rate equations
Population dynamics (general) (92D25) Stochastic ordinary differential equations (aspects of stochastic analysis) (60H10) Computational methods for stochastic equations (aspects of stochastic analysis) (60H35) Numerical solutions to stochastic differential and integral equations (65C30) Molecular structure (graph-theoretic methods, methods of differential topology, etc.) (92E10)
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Cites work
- scientific article; zbMATH DE number 3951715 (Why is no real title available?)
- scientific article; zbMATH DE number 1215244 (Why is no real title available?)
- scientific article; zbMATH DE number 3806623 (Why is no real title available?)
- scientific article; zbMATH DE number 3280851 (Why is no real title available?)
- Adjoint methods for PDEs: a posteriori error analysis and postprocessing by duality
- Algorithm 823
- Computational high frequency wave propagation
- Computing the moments of high dimensional solutions of the master equation
- Conservative solution of the Fokker-Planck equation for stochastic chemical reactions
- Dimensional Reduction of the Fokker–Planck Equation for Stochastic Chemical Reactions
- Discrépance de suites associées à un système de numération (en dimension s)
- Estimation of modeling error in computational mechanics.
- Extracting macroscopic dynamics: model problems and algorithms
- Handbook of stochastic methods for physics, chemistry and the natural sciences.
- Limit theorems for sequences of jump Markov processes approximating ordinary differential processes
- Mathematical biology. Vol. 1: An introduction.
- Monte Carlo Variance of Scrambled Net Quadrature
- Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
- Nested stochastic simulation algorithms for chemical kinetic systems with multiple time scales
- Sociodynamics. A systematic approach to mathematical modelling in the social sciences
- Solutions of ordinary differential equations as limits of pure jump markov processes
- Solving Ordinary Differential Equations I
- The Fokker-Planck equation. Methods of solutions and applications.
- The lattice Boltzmann equation. For fluid dynamics and beyond
- Thirty years of sociodynamics. An integrated strategy of modelling in the social sciences: applications to migration and urban evolution
Cited in
(25)- Posterior inference on parameters of stochastic differential equations via non-linear Gaussian filtering and adaptive MCMC
- A Linear Programming Approach to Parameter Fitting for the Master Equation
- The linear noise approximation for spatially dependent biochemical networks
- Hysteresis effects in social behavior with parasitic infection
- Jump longer to jump less: improving dynamic boundary projection with \(h\)-scaling
- Computing the moments of high dimensional solutions of the master equation
- A graph-based approach for the approximate solution of the chemical master equation
- On the Gaussian approximation for master equations
- Correlated pseudo-marginal schemes for time-discretised stochastic kinetic models
- On the assumption of initial factorization in the master equation for weakly coupled systems. II: Solvable models
- Master equation solution of a plant disease model
- Simulation of stochastic diffusion via first exit times
- Accelerating Bayesian inference for stochastic epidemic models using incidence data
- Bayesian inference for Markov jump processes with informative observations
- Predictive modeling of cholera outbreaks in Bangladesh
- Inference for reaction networks using the linear noise approximation
- Markov chain Monte Carlo inference for Markov jump processes via the linear noise approximation
- An algebraic method to calculate parameter regions for constrained steady-state distribution in stochastic reaction networks
- Efficient \(\mathrm{SMC}^2\) schemes for stochastic kinetic models
- Diagnostics for assessing the linear noise and moment closure approximations
- Delayed acceptance particle MCMC for exact inference in stochastic kinetic models
- System-size expansion of the moments of a master equation
- Multiscale Simulation of Stochastic Reaction-Diffusion Networks
- Markovian dynamics on complex reaction networks
- Solving chemical master equations by adaptive wavelet compression
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