Dimensional Reduction of the Fokker–Planck Equation for Stochastic Chemical Reactions

DOI10.1137/050639120MaRDI QIDQ3446804zbMATHOpenAlexFDO

Authors Lars Ferm, Per Lötstedt

Publication date 26 June 2007

Published in Multiscale Modeling & Simulation (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1137/050639120

zbMATH Keywords

dimensional reductionFokker-Planck equationmaster equationreaction rate equations

Mathematics Subject Classification ID

Method of lines for initial value and initial-boundary value problems involving PDEs (65M20) Mesh generation, refinement, and adaptive methods for the numerical solution of initial value and initial-boundary value problems involving PDEs (65M50) Stochastic methods (Fokker-Planck, Langevin, etc.) applied to problems in time-dependent statistical mechanics (82C31)

Recommendations

• Fokker–Planck approximation of the master equation in molecular biology
• Conservative solution of the Fokker-Planck equation for stochastic chemical reactions
• Numerical method for coupling the macro and meso scales in stochastic chemical kinetics
• On reduced models for the chemical master equation
• Analysis of the Multiplane Method for Stochastic Simulations of Reaction Networks with Fluctuations

Cited in

(14)

• Sparse grids and hybrid methods for the chemical master equation
• Hybrid method for the chemical master equation
• A Fokker-Planck approach to the study of robustness in gene expression
• Conservative solution of the Fokker-Planck equation for stochastic chemical reactions
• Reduction for stochastic biochemical reaction networks with multiscale conservations
• A hierarchy of approximations of the master equation scaled by a size parameter
• Reductionist approach to chemical rate constants using conditional energy probabilities
• Reaction-diffusion models from the Fokker-Planck formulation ofchemical processes
• On reduced models for the chemical master equation
• Fokker–Planck approximation of the master equation in molecular biology
• Numerical method for coupling the macro and meso scales in stochastic chemical kinetics
• From chemical Langevin equations to Fokker-Planck equation: application of Hodge decomposition and Klein-Kramers equation
• Adaptive solution of the master equation in low dimensions
• Krylov subspace approximation for quadratic-bilinear differential system

This page was built for publication: Dimensional Reduction of the Fokker–Planck Equation for Stochastic Chemical Reactions

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q3446804)