Multiscale stochastic simulations of chemical reactions with regulated scale separation

DOI10.1016/J.JCP.2012.11.030MaRDI QIDQ402182zbMATH OpenOpenAlexFDO

Authors Petros Koumoutsakos, Justin Feigelman

Publication date 27 August 2014

Published in Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jcp.2012.11.030

zbMATH Keywords

stochastic simulation algorithmstiff systemscutoff phenomenonflow averaging integratorsheterogeneous multiscale methods

Mathematics Subject Classification ID

Monte Carlo methods (65C05) Probabilistic models, generic numerical methods in probability and statistics (65C20) Chemically reacting flows (80A32)

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Cites work

• scientific article; zbMATH DE number 195091 (Why is no real title available?)
• A computational strategy for multiscale systems with applications to Lorenz 96 model
• A general strategy for designing seamless multiscale methods
• Adaptive mesh refinement for stochastic reaction-diffusion processes
• Heterogeneous multiscale methods: a review
• Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
• Nonintrusive and structure preserving multiscale integration of stiff ODEs, SDEs, and Hamiltonian systems with hidden slow dynamics via flow averaging
• The heterogeneous multiscale method

Cited in

(13)

• Boosted hybrid method for solving chemical reaction systems with multiple scales in time and population size
• Stochastic simulation of chemical reactions in spatially complex media
• Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
• Data-driven discovery of multiscale chemical reactions governed by the law of mass action
• \(S\)-leaping: an adaptive, accelerated stochastic simulation algorithm, bridging \(\tau\)-leaping and \(R\)-leaping
• Upscaling chemical reactions in multicontinuum systems: when might time fractional equations work?
• Strong convergence and speed up of nested stochastic simulation algorithm
• ``Final all possible steps approach for accelerating stochastic simulation of coupled chemical reactions
• Physically consistent simulation of mesoscale chemical kinetics: the non-negative FIS-\(\alpha\) method
• On the use of reverse Brownian motion to accelerate hybrid simulations
• Nested stochastic simulation algorithms for chemical kinetic systems with multiple time scales
• Multiscale methods and modelling for chemical reactions on oscillating surfaces
• Multiscale stochastic reaction-diffusion algorithms combining Markov chain models with stochastic partial differential equations

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