Analysis of Explicit Tau-Leaping Schemes for Simulating Chemically Reacting Systems

From MaRDI portal
Publication:3503938

DOI10.1137/06066792XzbMath1145.92041OpenAlexW2135734223MaRDI QIDQ3503938

Tie-Jun Li

Publication date: 10 June 2008

Published in: Multiscale Modeling & Simulation (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1137/06066792x




Related Items

Convergence of Regularized Particle Filters for Stochastic Reaction NetworksMultilevel hybrid Chernoff tau-leapExplicit Methods for Stiff Stochastic Differential EquationsModelling biochemical reaction systems by stochastic differential equations with reflectionJump-Diffusion Approximation of Stochastic Reaction Dynamics: Error Bounds and AlgorithmsStrong Convergence for Split-Step Methods in Stochastic Jump KineticsStability and Strong Convergence for Spatial Stochastic KineticsA Review of Stochastic and Delay Simulation Approaches in Both Time and Space in Computational Cell BiologyExtending the multi-level method for the simulation of stochastic biological systemsReducing Bias in Event Time Simulations via Measure ChangesEfficient simulation of discrete stochastic reaction systems with a splitting methodTau leaping of stiff stochastic chemical systems via local central limit approximationLearning-based importance sampling via stochastic optimal control for stochastic reaction networksError Analysis for D-Leaping Scheme of Chemical Reaction System with DelayIMPLICIT SIMULATION METHODS FOR STOCHASTIC CHEMICAL KINETICSImportance sampling for a robust and efficient multilevel Monte Carlo estimator for stochastic reaction networksErgodic Approximation to Chemical Reaction System with DelayError analysis of tau-leap simulation methodsAn exact stochastic hybrid model of excitable membranes including spatio-temporal evolutionEstimation of Parameter Sensitivities for Stochastic Reaction Networks Using Tau-Leap SimulationsMultilevel hybrid split-step implicit tau-leapChemical master equation and Langevin regimes for a gene transcription modelRobustly simulating biochemical reaction kinetics using multi-level Monte Carlo approachesA Multilevel Adaptive Reaction-splitting Simulation Method for Stochastic Reaction NetworksA recursive method to calculate the expected molecule numbers for a polymerization network with a small number of subunitsConvergence of Moments of tau Leaping Schemes for Unbounded Markov Processes on Integer LatticesModeling Anaerobic Digestion Using Stochastic ApproachesTowards automatic global error control: Computable weak error expansion for the tau-leap methodSlow-scale split-step tau-leap method for stiff stochastic chemical systemsLow variance couplings for stochastic models of intracellular processes with time-dependent rate functions