A Review of Stochastic and Delay Simulation Approaches in Both Time and Space in Computational Cell Biology
From MaRDI portal
Publication:4555235
DOI10.1007/978-3-319-62627-7_11zbMath1401.92063OpenAlexW2612418406MaRDI QIDQ4555235
Tatiana T. Marquez-Lago, André Leier, Kevin Burrage, Pamela M. Burrage
Publication date: 19 November 2018
Published in: Stochastic Processes, Multiscale Modeling, and Numerical Methods for Computational Cellular Biology (Search for Journal in Brave)
Full work available at URL: https://eprints.qut.edu.au/105439/1/holcman_bcnn_16draft2_31Oct.pdf
delayanomalous diffusionstochastic simulationintrinsic noisecontinuous stochastic methodsdiscrete stochastic methods
Stochastic ordinary differential equations (aspects of stochastic analysis) (60H10) Cell biology (92C37)
Uses Software
Cites Work
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Unnamed Item
- A boundary preserving numerical algorithm for the Wright-Fisher model with mutation
- Adaptive stepsize based on control theory for stochastic differential equations
- Delay differential equations: with applications in population dynamics
- Solving the chemical master equation for monomolecular reaction systems analytically
- Solving the chemical master equation by a fast adaptive finite state projection based on the stochastic simulation algorithm
- Stochastic simulation of chemical reactions in spatially complex media
- A delay differential equation model for tumor growth
- Effects of stochastic channel gating and distribution on the cardiac action potential
- Extending the quasi-steady state approximation by changing variables
- Stochastic simulation of coupled reaction-diffusion processes
- Delay equations modeling the effects of phase-specific drugs and immunotherapy on proliferating tumor cells
- A simple time delay model for eukaryotic cell cycle
- A multiple time interval finite state projection algorithm for the solution to the chemical master equation
- Analysis of Explicit Tau-Leaping Schemes for Simulating Chemically Reacting Systems
- Multiscale Modeling of Chemical Kinetics via the Master Equation
- Simulation of Stochastic Reaction-Diffusion Processes on Unstructured Meshes
- Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces
- Parallelising the finite state projection method
- A Variable Stepsize Implementation for Stochastic Differential Equations
- A distribution‐matching method for parameter estimation and model selection in computational biology
- Weak Error Analysis of Numerical Methods for Stochastic Models of Population Processes
- A comparison of biased simulation schemes for stochastic volatility models
- Delay chemical master equation: direct and closed-form solutions
- Consistency and Stability of Tau-Leaping Schemes for Chemical Reaction Systems
- The random walk's guide to anomalous diffusion: A fractional dynamics approach
