Multiscale Modeling of Chemical Kinetics via the Master Equation
From MaRDI portal
Publication:3545642
DOI10.1137/060678154zbMATH Open1153.60370OpenAlexW2048634371MaRDI QIDQ3545642FDOQ3545642
Authors: S. MacNamara, Kevin Burrage, Roger B. Sidje 
Publication date: 11 December 2008
Published in: Multiscale Modeling & Simulation (Search for Journal in Brave)
Full work available at URL: https://semanticscholar.org/paper/bbc05988736afac4fea456ac8fae519f2dbbcea0
Recommendations
- A new look at the chemical master equation
- Hybrid method for the chemical master equation
- Hybrid stochastic-deterministic solution of the chemical master equation
- A dynamical low-rank approach to the chemical master equation
- A multiple time interval finite state projection algorithm for the solution to the chemical master equation
Numerical analysis or methods applied to Markov chains (65C40) Iterative numerical methods for linear systems (65F10) Computational methods for stochastic equations (aspects of stochastic analysis) (60H35)
Cited In (43)
- APPROXIMATE EXPONENTIAL ALGORITHMS TO SOLVE THE CHEMICAL MASTER EQUATION
- Conditional Monte Carlo for Reaction Networks
- Local error estimates for adaptive simulation of the reaction-diffusion master equation via operator splitting
- Adaptive solution of the master equation in low dimensions
- Multiscale methods and modelling for chemical reactions on oscillating surfaces
- HRSSA - efficient hybrid stochastic simulation for spatially homogeneous biochemical reaction networks
- Scaling Analysis in Modeling Transport and Reaction Processes
- Chemical master equation and Langevin regimes for a gene transcription model
- Implementation of variable parameters in the Krylov-based finite state projection for solving the chemical master equation
- Hybrid method for the chemical master equation
- Is there anything left to say on enzyme kinetic constants and quasi-steady state approximation?
- Title not available (Why is that?)
- Method of conditional moments (MCM) for the chemical master equation
- Sparse grids and hybrid methods for the chemical master equation
- Multiscale stochastic simulation algorithm with stochastic partial equilibrium assumption for chemically reacting systems
- Multiscale models and stochastic simulation methods for computing rare but key binding events in cell biology
- State space truncation with quantified errors for accurate solutions to discrete chemical master equation
- Hybrid stochastic-deterministic solution of the chemical master equation
- Physically consistent simulation of mesoscale chemical kinetics: the non-negative FIS-\(\alpha\) method
- Fluctuating-rate model with multiple gene states
- Hybrid discrete/continuum algorithms for stochastic reaction networks
- Localization and Pseudospectra of Twisted Toeplitz Matrices with Applications to Ion Channels
- Separation of time-scales and model reduction for stochastic reaction networks
- High-order Numerical Homogenization for Dissipative Ordinary Differential Equations
- Markovian dynamics on complex reaction networks
- Fractional Euler Limits and their Applications
- Krylov and steady-state techniques for the solution of the chemical master equation for the mitogen-activated protein kinase cascade
- A shift and invert reorthogonalization Arnoldi algorithm for solving the chemical master equation
- Solving the chemical master equation by a fast adaptive finite state projection based on the stochastic simulation algorithm
- Positivity-preserving methods for ordinary differential equations
- A Review of Stochastic and Delay Simulation Approaches in Both Time and Space in Computational Cell Biology
- Solving the chemical master equation for monomolecular reaction systems and beyond: a Doi-Peliti path integral view
- Solving the chemical master equation for monomolecular reaction systems analytically
- A new look at the chemical master equation
- Applications of Magnus expansions and pseudospectra to Markov processes
- Finite state projection for approximating the stationary solution to the chemical master equation using reaction rate equations
- A dynamical low-rank approach to the chemical master equation
- Solving chemical master equations by adaptive wavelet compression
- Radial basis function collocation for the chemical master equation
- Hybrid simulation of autoregulation within transcription and translation
- A kinetic framework for modeling nonequilibrium biological and chemical systems
- Model Reconstruction for Moment-Based Stochastic Chemical Kinetics
- On reduced models for the chemical master equation
This page was built for publication: Multiscale Modeling of Chemical Kinetics via the Master Equation
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q3545642)
