Multiscale Modeling of Chemical Kinetics via the Master Equation

Numerical analysis or methods applied to Markov chains (65C40) Iterative numerical methods for linear systems (65F10) Computational methods for stochastic equations (aspects of stochastic analysis) (60H35)

Cited In (39)

APPROXIMATE EXPONENTIAL ALGORITHMS TO SOLVE THE CHEMICAL MASTER EQUATION
Conditional Monte Carlo for Reaction Networks
Local error estimates for adaptive simulation of the reaction-diffusion master equation via operator splitting
Adaptive solution of the master equation in low dimensions
Multiscale methods and modelling for chemical reactions on oscillating surfaces
HRSSA - efficient hybrid stochastic simulation for spatially homogeneous biochemical reaction networks
Scaling Analysis in Modeling Transport and Reaction Processes
Implementation of variable parameters in the Krylov-based finite state projection for solving the chemical master equation
Hybrid method for the chemical master equation
Is there anything left to say on enzyme kinetic constants and quasi-steady state approximation?
Title not available (Why is that?)
Method of conditional moments (MCM) for the chemical master equation
Sparse grids and hybrid methods for the chemical master equation
Multiscale models and stochastic simulation methods for computing rare but key binding events in cell biology
State space truncation with quantified errors for accurate solutions to discrete chemical master equation
Physically consistent simulation of mesoscale chemical kinetics: the non-negative FIS-\(\alpha\) method
Fluctuating-rate model with multiple gene states
Hybrid discrete/continuum algorithms for stochastic reaction networks
Localization and Pseudospectra of Twisted Toeplitz Matrices with Applications to Ion Channels
Separation of time-scales and model reduction for stochastic reaction networks
High-order Numerical Homogenization for Dissipative Ordinary Differential Equations
Markovian dynamics on complex reaction networks
Fractional Euler Limits and their Applications
Krylov and steady-state techniques for the solution of the chemical master equation for the mitogen-activated protein kinase cascade
A shift and invert reorthogonalization Arnoldi algorithm for solving the chemical master equation
Solving the chemical master equation by a fast adaptive finite state projection based on the stochastic simulation algorithm
Positivity-preserving methods for ordinary differential equations
A Review of Stochastic and Delay Simulation Approaches in Both Time and Space in Computational Cell Biology
Solving the chemical master equation for monomolecular reaction systems and beyond: a Doi-Peliti path integral view
A new look at the chemical master equation
Applications of Magnus expansions and pseudospectra to Markov processes
Finite state projection for approximating the stationary solution to the chemical master equation using reaction rate equations
A dynamical low-rank approach to the chemical master equation
Solving chemical master equations by adaptive wavelet compression
Radial basis function collocation for the chemical master equation
Hybrid simulation of autoregulation within transcription and translation
A kinetic framework for modeling nonequilibrium biological and chemical systems
Model Reconstruction for Moment-Based Stochastic Chemical Kinetics
On reduced models for the chemical master equation

This page was built for publication: Multiscale Modeling of Chemical Kinetics via the Master Equation

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q3545642)