Radial basis function collocation for the chemical master equation

DOI10.1142/S0219876210002234MaRDI QIDQ2837976zbMATH OpenFDO

Authors Christopher Beattie, Yang Cao, Layne T. Watson, Jingwei Zhang

Publication date 8 July 2013

Published in International Journal of Computational Methods (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1142/S0219876210002234

zbMATH Keywords

chemical kineticstransient analysis of Markov chains

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Computational methods for problems pertaining to biology (92-08) Classical flows, reactions, etc. in chemistry (92E20)

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Cites work

• A dynamical low-rank approach to the chemical master equation
• A random variable shape parameter strategy for radial basis function approximation methods
• A solver for the stochastic master equation applied to gene regulatory networks
• Adaptive Discrete Galerkin Methods Applied to the Chemical Master Equation
• Adaptive solution of the master equation in low dimensions
• An adaptive wavelet method for the chemical master equation
• Computational treatment of polyreaction kinetics by orthogonal polynomials of a discrete variable
• Deterministic parallel global parameter estimation for a model of the budding yeast cell cycle
• scientific article; zbMATH DE number 52118 (Why is no real title available?)
• scientific article; zbMATH DE number 3806623 (Why is no real title available?)
• Metric spaces and completely monontone functions
• Multiscale Modeling of Chemical Kinetics via the Master Equation
• On the optimal shape parameters of radial basis functions used for 2-D meshless methods
• Sparse grids and hybrid methods for the chemical master equation
• Spectral approximation of solutions to the chemical master equation

Cited in

(4)

• Adaptive Discrete Galerkin Methods Applied to the Chemical Master Equation
• Graphical representation of separatrices of attraction basins in two and three-dimensional dynamical systems
• Hybrid discrete/continuum algorithms for stochastic reaction networks
• A modified uniformization method for the solution of the chemical master equation

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