Tau leaping of stiff stochastic chemical systems via local central limit approximation
DOI10.1016/J.JCP.2013.02.011zbMATH Open1302.65033OpenAlexW1993821622MaRDI QIDQ401576FDOQ401576
Authors: Yushu Yang, Muruhan Rathinam
Publication date: 27 August 2014
Published in: Journal of Computational Physics (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jcp.2013.02.011
Recommendations
- Consistency and Stability of Tau-Leaping Schemes for Chemical Reaction Systems
- Reversible-equivalent-monomolecular tau: a leaping method for ``small number and stiff stochastic chemical systems
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- Analysis of Explicit Tau-Leaping Schemes for Simulating Chemically Reacting Systems
- Stochastic projective methods for simulating stiff chemical reacting systems
numerical examplesimplicit Euler schemestochastic chemical kineticsstiff systemsfluid limitcentral limit approximationtau leaping
Central limit and other weak theorems (60F05) Stochastic ordinary differential equations (aspects of stochastic analysis) (60H10) Ordinary differential equations and systems with randomness (34F05) Computational methods for stochastic equations (aspects of stochastic analysis) (60H35) Numerical solutions to stochastic differential and integral equations (65C30) Numerical methods for stiff equations (65L04) Chemical kinetics in thermodynamics and heat transfer (80A30)
Cites Work
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- Solution of the Equation $AX + XB = C$ by Inversion of an $M \times M$ or $N \times N$ Matrix
- Analysis of Explicit Tau-Leaping Schemes for Simulating Chemically Reacting Systems
- Consistency and Stability of Tau-Leaping Schemes for Chemical Reaction Systems
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- Efficient simulation of discrete stochastic reaction systems with a splitting method
- Error analysis of tau-leap simulation methods
- Reversible-equivalent-monomolecular tau: a leaping method for ``small number and stiff stochastic chemical systems
Cited In (15)
- Estimation of parameter sensitivities for stochastic reaction networks using tau-leap simulations
- Reversible-equivalent-monomolecular tau: a leaping method for ``small number and stiff stochastic chemical systems
- Consistency and Stability of Tau-Leaping Schemes for Chemical Reaction Systems
- Turing's theory of morphogenesis: where we started, where we are and where we want to go
- Slow-scale tau-leaping method
- Convergence of moments of tau leaping schemes for unbounded Markov processes on integer lattices
- Adaptive time-stepping using control theory for the chemical Langevin equation
- Fast approximate simulation of finite long-range spin systems
- A stochastic exponential Euler scheme for simulation of stiff biochemical reaction systems
- Optimal explicit stabilized postprocessed \(\tau\)-leap method for the simulation of chemical kinetics
- A new look at the chemical master equation
- Tau Leaping Stochastic Simulation Method in P Systems
- Analysis of Explicit Tau-Leaping Schemes for Simulating Chemically Reacting Systems
- The weak convergence analysis of tau-leaping methods: revisited
- Slow-scale split-step tau-leap method for stiff stochastic chemical systems
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