Tau leaping of stiff stochastic chemical systems via local central limit approximation

DOI10.1016/J.JCP.2013.02.011MaRDI QIDQ401576zbMATH OpenOpenAlexFDO

Authors Yushu Yang, Muruhan Rathinam

Publication date 27 August 2014

Published in Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jcp.2013.02.011

zbMATH Keywords

numerical examplesimplicit Euler schemestochastic chemical kineticsstiff systemsfluid limitcentral limit approximationtau leaping

Mathematics Subject Classification ID

Central limit and other weak theorems (60F05) Stochastic ordinary differential equations (aspects of stochastic analysis) (60H10) Ordinary differential equations and systems with randomness (34F05) Computational methods for stochastic equations (aspects of stochastic analysis) (60H35) Numerical solutions to stochastic differential and integral equations (65C30) Numerical methods for stiff equations (65L04) Chemical kinetics in thermodynamics and heat transfer (80A30)

Recommendations

• Consistency and Stability of Tau-Leaping Schemes for Chemical Reaction Systems
• Reversible-equivalent-monomolecular tau: a leaping method for ``small number and stiff stochastic chemical systems
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• Analysis of Explicit Tau-Leaping Schemes for Simulating Chemically Reacting Systems
• Stochastic projective methods for simulating stiff chemical reacting systems

Cites work

• scientific article; zbMATH DE number 3951715 (Why is no real title available?)
• scientific article; zbMATH DE number 1514781 (Why is no real title available?)
• scientific article; zbMATH DE number 3806623 (Why is no real title available?)
• Analysis of Explicit Tau-Leaping Schemes for Simulating Chemically Reacting Systems
• Consistency and Stability of Tau-Leaping Schemes for Chemical Reaction Systems
• Efficient simulation of discrete stochastic reaction systems with a splitting method
• Error analysis of tau-leap simulation methods
• Reversible-equivalent-monomolecular tau: a leaping method for ``small number and stiff stochastic chemical systems
• Solution of the Equation $AX + XB = C$ by Inversion of an $M \times M$ or $N \times N$ Matrix

Cited in

(15)

• Estimation of parameter sensitivities for stochastic reaction networks using tau-leap simulations
• Reversible-equivalent-monomolecular tau: a leaping method for ``small number and stiff stochastic chemical systems
• Consistency and Stability of Tau-Leaping Schemes for Chemical Reaction Systems
• Slow-scale tau-leaping method
• Turing's theory of morphogenesis: where we started, where we are and where we want to go
• Convergence of moments of tau leaping schemes for unbounded Markov processes on integer lattices
• Adaptive time-stepping using control theory for the chemical Langevin equation
• A stochastic exponential Euler scheme for simulation of stiff biochemical reaction systems
• Fast approximate simulation of finite long-range spin systems
• Optimal explicit stabilized postprocessed \(\tau\)-leap method for the simulation of chemical kinetics
• A new look at the chemical master equation
• Tau Leaping Stochastic Simulation Method in P Systems
• Analysis of Explicit Tau-Leaping Schemes for Simulating Chemically Reacting Systems
• The weak convergence analysis of tau-leaping methods: revisited
• Slow-scale split-step tau-leap method for stiff stochastic chemical systems

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