Modelling biochemical reaction systems by stochastic differential equations with reflection

DOI10.1016/J.JTBI.2016.02.010MaRDI QIDQ306774zbMATH OpenOpenAlexWikidataFDO

Authors Yuanling Niu, Kevin Burrage, Luonan Chen

Publication date 1 September 2016

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2016.02.010

zbMATH Keywords

stochastic simulationstochastic modellingbiochemical reaction systemreflected stochastic differential equationsreflection and correction approach

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

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Cites work

• Analysis of Explicit Tau-Leaping Schemes for Simulating Chemically Reacting Systems
• Approximations for stochastic differential equations with reflecting convex boundaries
• Complexity of Multilevel Monte Carlo Tau-Leaping
• Conservative solution of the Fokker-Planck equation for stochastic chemical reactions
• Euler's approximations of solutions of SDEs with reflecting boundary.
• Modeling and Simulation of Biochemical Processes Using Stochastic Hybrid Systems: The Sugar Cataract Development Process
• Physically consistent simulation of mesoscale chemical kinetics: the non-negative FIS-\(\alpha\) method
• Stochastic Modeling of Naïve T Cell Homeostasis for Competing Clonotypes via the Master Equation
• Stochastic Models Describing Human Metabolic Processes Using SDEs with Reflection
• Stochastic differential equations with reflecting boundary condition in convex regions

Cited in

(13)

• On constrained Langevin equations and (bio)chemical reaction networks
• Large deviations and exit-times for reflected McKean-Vlasov equations with self-stabilising terms and superlinear drifts
• Rapid-equilibrium approximation applied to mathematical models of tracer dynamics in biochemical reaction systems
• Construction of special soliton solutions to the stochastic Riccati equation
• Analysis of multimodal stochastic oscillations in a biochemical reaction model
• A data-driven method to learn a jump diffusion process from aggregate biological gene expression data
• Multi-level Monte Carlo methods with the truncated Euler-Maruyama scheme for stochastic differential equations
• Well-posedness of stochastic variational inequalities with discontinuous drifts
• On the nonlinear dynamic state reconstruction problem for chemical/biochemical reaction systems in the presence of model uncertainty
• On real-valued SDE and nonnegative-valued SDE population models with demographic variability
• Corrigendum for ``Modelling biochemical reaction systems by stochastic differential equations with reflection
• The sorting direct method for stochastic simulation of biochemical systems with varying reaction execution behavior
• Stochastic Models Describing Human Metabolic Processes Using SDEs with Reflection

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