Component-based construction of bio-pathway models: the parameter estimation problem

DOI10.1016/J.TCS.2011.02.013MaRDI QIDQ548481zbMATH OpenOpenAlexFDO

Authors Geoffrey Koh, David Hsu, P. S. Thiagarajan

Publication date 28 June 2011

Published in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.tcs.2011.02.013

zbMATH Keywords

decompositioncompositionODEsbiochemical networkscomponentsbelief propagationfactor graphs

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Applications of graph theory (05C90) Computing methodologies and applications (68U99) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)

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Cites work

• scientific article; zbMATH DE number 4070125 (Why is no real title available?)
• Depth-First Search and Linear Graph Algorithms
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Cited in

(5)

• Refining cellular pathway models using an ensemble of heterogeneous data sources
• Identification of components in biochemical pathways: extensive aqpplication to SBML models
• Modular parameter identification of biomolecular networks
• Inference of the stochastic MAPK pathway by modified diffusion bridge method
• Parallelized Parameter Estimation of Biological Pathway Models

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• COPASI

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