Relating PDEs in cylindrical coordinates and CTMCs with levels of concentration

DOI10.1016/J.ENTCS.2010.12.005MaRDI QIDQ5404086zbMATH OpenOpenAlexDBLPWikidataFDO

Authors A. Degasperi, M. Calder

Publication date 21 March 2014

Published in Electronic Notes in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.entcs.2010.12.005

zbMATH Keywords

ordinary differential equationspartial differential equationsreaction-diffusion equationscontinuous time Markov chainscylindrical coordinatesgeometrical space

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Models and methods for concurrent and distributed computing (process algebras, bisimulation, transition nets, etc.) (68Q85)

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Cites work

• scientific article; zbMATH DE number 3795730 (Why is no real title available?)
• A process algebra framework for multi-scale modelling of biological systems
• Bio-PEPA: A framework for the modelling and analysis of biological systems
• Computational Methods in Systems Biology
• Modelling biological compartments in bio-PEPA
• Rule-Based Modelling of Cellular Signalling
• Some investigations concerning the CTMC and the ODE model derived from bio-PEPA

Cited in

(2)

• Fundamental results on the reactionâdiffusion equations associated with a PEPA model
• Asymptotic behaviour of a conservative reaction-diffusion system associated with a Markovian process algebra model

Describes a project that uses

Uses Software

• LBS
• COPASI
• PEPA
• BIOCHAM
• BioNetGen
• FlexPDE
• Bio-PEPA
• PRISM

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