Cited in
(48)- Incorporating biological information into linear models: a Bayesian approach to the selection of pathways and genes
- Multiple testing of submatrices of a precision matrix with applications to identification of between pathway interactions
- Estimation of sparse directed acyclic graphs for multivariate counts data
- Graph theoretic concepts in the study of biological networks
- Bayesian functional enrichment analysis for the Reactome database
- PetriNets
- KEGGgraph
- GO.db
- NCIgraph
- MetaCyc
- TRANSPATH
- Celldesigner
- FatiGO
- GenMAPP
- BioGRID
- KEGG
- topologyGSA
- MALDIquant
- KONECT
- CHAMP
- graphite
- ClueGO
- clipper
- MAPPFinder
- SPARQ2L
- ArrayExpress
- ErmineJ
- Expression2Kinases
- CellPublisher
- QPath
- Supracentrality
- Multiparticle reaction noise characteristics
- Hhugin
- Mmunin
- PathMiner
- ProTranslator
- Graphical modeling for gene set analysis: a critical appraisal
- Systems Biology: The Next Frontier for Bioinformatics
- A systems biology approach to understanding alcoholic liver disease molecular mechanism: the development of static and dynamic models
- Petri nets for modelling metabolic pathways: a survey
- Post-processing partitions to identify domains of modularity optimization
- Signal transduction pathways as concurrent reactive systems: a modeling and simulation approach using LSCs and the Play-Engine
- A multi-functional analyzer uses parameter constraints to improve the efficiency of model-based gene-set analysis
- ProTranslator: zero-shot protein function prediction using textual description
- DeepText2GO
- GOLabeler
- NewGOA
- QAUST
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