Graphical modeling for gene set analysis: A critical appraisal

DOI10.1002/bimj.201300287zbMath1334.62010OpenAlexW1519997692WikidataQ40763776 ScholiaQ40763776MaRDI QIDQ3465342

M. Sofia Massa, Vera Djordjilović, Chiara Romualdi, Monica Chiogna

Publication date: 21 January 2016

Published in: Biometrical Journal (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1002/bimj.201300287

zbMATH Keywords

graphical modelingpathwaysgene set analysis

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10) Graphical methods in statistics (62A09)

Uses Software

• Bioconductor
• KEGGgraph
• NCIgraph
• KEGG
• Reactome
• topologyGSA
• graphite
• clipper

Cites Work

• Studentized permutation tests for non-i.i.d. hypotheses and the generalized Behrens-Fisher problem
• Sparse inverse covariance estimation with the graphical lasso
• Gaussian Markov distributions over finite graphs
• Multiple hypothesis testing in microarray experiments.
• Markov properties for mixed graphs
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