The recognition and prediction of ^70 promoters in \textit{Escherichia coli} K-12

DOI10.1016/J.JTBI.2006.02.007zbMATH Open1447.92257OpenAlexW2037611385WikidataQ51944325 ScholiaQ51944325MaRDI QIDQ2201834FDOQ2201834

Authors: Qian-Zhong Li, Hao Lin 

Publication date: 17 September 2020

Published in: Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jtbi.2006.02.007

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zbMATH Keywords

promoter recognitionconservative hexamers segmentposition-correlation scoring function (PCSF)position-correlation scoring matrix (PCSM)

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Protein sequences, DNA sequences (92D20)

Cited In (5)

• The cross-species prediction of bacterial promoters using a support vector machine
• Using weighted features to predict recombination hotspots in \textit{Saccharomyces cerevisiae}
• Genome-wide analysis of bacterial promoter regions
• A novel approach to estimation of \(E\). \(coli\) promoter gene sequences: Combining feature selection and least square support vector machine (FS\_LSSVM)
• BacPP: bacterial promoter prediction -- a tool for accurate sigma-factor specific assignment in enterobacteria

Uses Software

• RegulonDB

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