The recognition and prediction of ^70 promoters in \textit{Escherichia coli} K-12

DOI10.1016/J.JTBI.2006.02.007MaRDI QIDQ2201834zbMATHOpenAlexWikidataFDO

Authors Qian-Zhong Li, Hao Lin

Publication date 17 September 2020

Published in Journal of Theoretical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jtbi.2006.02.007

zbMATH Keywords

promoter recognitionconservative hexamers segmentposition-correlation scoring function (PCSF)position-correlation scoring matrix (PCSM)

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Protein sequences, DNA sequences (92D20)

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Cited in

(7)

• The cross-species prediction of bacterial promoters using a support vector machine
• Genome-wide analysis of bacterial promoter regions
• A novel approach to estimation of \(E\). \(coli\) promoter gene sequences: Combining feature selection and least square support vector machine (FS\_LSSVM)
• Upstream curved sequences in \textit{E. coli} are related to the regulation of transcription initiation
• Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices
• Using weighted features to predict recombination hotspots in \textit{Saccharomyces cerevisiae}
• BacPP: bacterial promoter prediction -- a tool for accurate sigma-factor specific assignment in enterobacteria

Describes a project that uses

Uses Software

• RegulonDB

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