Transcription factor-binding site identification and gene classification via fusion of the supervised-weighted discrete kernel clustering and support vector machine

DOI10.1080/02664763.2013.845143MaRDI QIDQ5128604zbMATH OpenOpenAlexFDO

Authors Insuk Sohn, Jooyong Shim, Changha Hwang, Sujong Kim, Jae Won Lee

Publication date 28 October 2020

Published in Journal of Applied Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1080/02664763.2013.845143

zbMATH Keywords

gene classificationsupervised clusteringsupport vector machinestranscription factortranscription factor-binding site

Mathematics Subject Classification ID

Statistics (62-XX)

Recommendations

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Cites work

• Informative transcription factor selection using support vector machine-based generalized approximate cross validation criteria
• Selecting marker genes for cancer classification using supervised weighted kernel clustering and the support vector machine

Cited in

(4)

• Combining experts in order to identify binding sites in yeast and mouse genomic data
• A Simple Hyper-Geometric Approach for Discovering Putative Transcription Factor Binding Sites
• On maximum depth classifiers: depth distribution approach
• Informative transcription factor selection using support vector machine-based generalized approximate cross validation criteria

Describes a project that uses

Uses Software

• JASPAR
• LogicReg

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