Cited in
(39)- Comment: strengthening empirical evaluation of causal inference methods
- Sparse regression and support recovery with \(\mathbb{L}_2\)-boosting algorithms
- Operator-valued kernel-based vector autoregressive models for network inference
- Ultra-scalable and efficient methods for hybrid observational and experimental local causal pathway discovery
- An approach for reduction of false predictions in reverse engineering of gene regulatory networks
- Modeling delayed dynamics in biological regulatory networks from time series data
- Loss of conservation of graph centralities in reverse-engineered transcriptional regulatory networks
- Identifying dynamical time series model parameters from equilibrium samples, with application to gene regulatory networks
- Gene regulatory networks. Methods and protocols
- G1DBN
- minet
- SynTReN
- Netsim
- Diffcorr
- ARACNE
- bc3net
- Learning a nonlinear dynamical system model of gene regulation: A perturbed steady-state approach
- sparsebn
- OKVAR-Boost
- TIGRESS
- DREAMTools
- hiPathDB
- PREMER
- RegulonDB
- BioPreDyn-bench
- DINGO
- dynGENIE3
- GeNGe
- SCENIC
- SINCERITIES
- SimSeq
- PyDREAM
- slingshot
- DREAM4
- CausalKinetiX
- GENIE3
- JDINAC
- VCNet
- Constrained community-based gene regulatory network inference
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