Modeling delayed dynamics in biological regulatory networks from time series data
DOI10.3390/A10010008zbMATH Open1461.62184OpenAlexW2568256205MaRDI QIDQ1662593FDOQ1662593
Authors: Emna Ben Abdallah, Tony Ribeiro, Morgan Magnin, Olivier Roux, Katsumi Inoue 
Publication date: 20 August 2018
Published in: Algorithms (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.3390/a10010008
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time series datadynamics modelinglearning modelsdelayed biological regulatory networkstimed automata networks
Time series, auto-correlation, regression, etc. in statistics (GARCH) (62M10) Applications of statistics to biology and medical sciences; meta analysis (62P10) Learning and adaptive systems in artificial intelligence (68T05) Systems biology, networks (92C42)
Cites Work
- Knowledge Representation, Reasoning and Declarative Problem Solving
- Temporal constraints in the logical analysis of regulatory networks
- Refining dynamics of gene regulatory networks in a stochastic \(\pi\)-calculus framework
- Identification of genetic networks by strategic gene disruptions and gene overexpressions under a Boolean model.
- Temporal Boolean network models of genetic networks and their inference from gene expression time series.
- Synchronization of Boolean networks with time delays
- Completing networks using observed data
- Inference of delayed biological regulatory networks from time series data
- Goal-oriented reduction of automata networks
- Identification of biological regulatory networks from process hitting models
- Encoding Higher Level Extensions of Petri Nets in Answer Set Programming
- Synthesis of biological models from mutation experiments
- Dynamic network functional comparison via approximate-bisimulation
Cited In (6)
- Modeling genetic regulatory networks: a delay discrete dynamical model approach
- Learning explanations for biological feedback with delays using an event calculus
- STATE-SPACE MODEL WITH TIME DELAYS FOR GENE REGULATORY NETWORKS
- Learning equations from biological data with limited time samples
- Inference of delayed biological regulatory networks from time series data
- Integrating Time-Series Data in Large-Scale Discrete Cell-Based Models
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