Non-homogeneous dynamic Bayesian networks with Bayesian regularization for inferring gene regulatory networks with gradually time-varying structure

DOI10.1007/S10994-012-5311-XzbMATH Open1260.92027OpenAlexW2113273949MaRDI QIDQ1945024

Frank Dondelinger, Dirk Husmeier, Sophie Lèbre

Publication date: 28 March 2013

Published in: Machine Learning (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s10994-012-5311-x

zbMATH Keywords

reversible jump Markov chain Monte Carlohierarchical Bayesian modelssystems and synthetic biologygene expression time seriesmultiple changepoint processes

Mathematics Subject Classification ID

Bayesian inference (62F15) Time series, auto-correlation, regression, etc. in statistics (GARCH) (62M10) Applications of statistics to biology and medical sciences; meta analysis (62P10) Systems biology, networks (92C42)

Cites Work

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• Inference from iterative simulation using multiple sequences
• Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
• Monte Carlo sampling methods using Markov chains and their applications
• Learning non-stationary dynamic Bayesian networks
• Non-homogeneous dynamic Bayesian networks for continuous data
• Structural Learning with Time-Varying Components: Tracking the Cross-Section of Financial Time Series

Cited In (13)

• Joint Gaussian graphical model estimation: a survey
• Self-regularized causal structure discovery for trajectory-based networks
• Inferring dynamic gene regulatory networks with low-order conditional independencies -- an evaluation of the method
• A non-homogeneous dynamic Bayesian network with a hidden Markov model dependency structure among the temporal data points
• Regularization of non-homogeneous dynamic Bayesian networks with global information-coupling based on hierarchical Bayesian models
• Title not available (Why is that?)
• Joint estimation of multiple related biological networks
• Operator-valued kernel-based vector autoregressive models for network inference
• Spectral Bayesian network theory
• Exact Bayesian inference for off-line change-point detection in tree-structured graphical models
• Inferring large graphs using \(\ell_1\)-penalized likelihood
• A non-homogeneous dynamic Bayesian network with sequentially coupled interaction parameters for applications in systems and synthetic biology
• Bayesian Graphical Regression

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