A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models

DOI10.1016/J.CSDA.2015.08.003zbMATH Open1468.62075OpenAlexW1208113704MaRDI QIDQ1660138FDOQ1660138

Authors: Takanori Hasegawa, Atsushi Niida, Tomoya Mori, Teppei Shimamura, Rui Yamaguchi, Satoru Miyano, Tatsuya Akutsu, Seiya Imoto 

Publication date: 15 August 2018

Published in: Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.csda.2015.08.003

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zbMATH Keywords

approximate Bayesian computationgene expressionnonlinear state space modelbiological simulation

Mathematics Subject Classification ID

Computational methods for problems pertaining to statistics (62-08) Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Inference from stochastic processes and prediction (62M20)

Cites Work

• Sequential Monte Carlo Samplers
• Estimation of parameters for macroparasite population evolution using approximate Bayesian computation
• An adaptive sequential Monte Carlo method for approximate Bayesian computation
• Filtering via approximate Bayesian computation
• Bayesian estimation of state-space models using the Metropolis-Hastings algorithm within Gibbs sampling.
• Entrainment versus chaos in a model for a circadian oscillator driven by light-dark cycles

Uses Software

• KEGG

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