A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models

DOI10.1016/J.CSDA.2015.08.003MaRDI QIDQ1660138zbMATH OpenOpenAlexFDO

Authors Takanori Hasegawa, Atsushi Niida, Tomoya Mori, Teppei Shimamura, Rui Yamaguchi, Satoru Miyano, Tatsuya Akutsu, Seiya Imoto

Publication date 15 August 2018

Published in Computational Statistics and Data Analysis (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.csda.2015.08.003

zbMATH Keywords

approximate Bayesian computationgene expressionnonlinear state space modelbiological simulation

Mathematics Subject Classification ID

Computational methods for problems pertaining to statistics (62-08) Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Inference from stochastic processes and prediction (62M20)

Recommendations

• Bayesian optimization for likelihood-free inference of simulator-based statistical models
• Bayesian analysis of simulation-based models
• Approximate Bayesian computation and simulation-based inference for complex stochastic epidemic models
• Approximate Bayesian inference in semi-mechanistic models
• A distribution-matching method for parameter estimation and model selection in computational biology
• Bayesian computation methods for inference in stochastic kinetic models
• Model choice problems using approximate Bayesian computation with applications to pathogen transmission data sets
• Optimal Bayesian experimental design for models with intractable likelihoods using indirect inference applied to biological process models

Cites work

• An adaptive sequential Monte Carlo method for approximate Bayesian computation
• Bayesian estimation of state-space models using the Metropolis-Hastings algorithm within Gibbs sampling.
• Entrainment versus chaos in a model for a circadian oscillator driven by light-dark cycles
• Estimation of parameters for macroparasite population evolution using approximate Bayesian computation
• Filtering via approximate Bayesian computation
• Sequential Monte Carlo Samplers

Cited in

(1)

• A distribution-matching method for parameter estimation and model selection in computational biology

Describes a project that uses

Uses Software

• KEGG

This page was built for publication: A likelihood-free filtering method via approximate Bayesian computation in evaluating biological simulation models

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q1660138)