STRING
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(only showing first 100 items - show all)- Updating of the Gaussian graphical model through targeted penalized estimation
- InterViewer
- DeepPurpose
- ProtVec
- DeepGOPlus
- DeepGO
- ProTranslator
- UDSMProt
- SigMod
- DOMINO
- DIAMOnD
- SANTA
- OncoKB
- NetCore
- NetMix2
- Inter-variable correlation prediction with fuzzy connected-triples
- Reconstruction methods for networks: the case of economic and financial systems
- A systems biology approach to understanding alcoholic liver disease molecular mechanism: the development of static and dynamic models
- SDTRLS: predicting drug-target interactions for complex diseases based on chemical substructures
- A bi-objective network design approach for discovering functional modules linking Golgi apparatus fragmentation and neuronal death
- MATHT: a web server for comprehensive transcriptome data analysis
- Computational cell biology. Methods and protocols
- Natalie 2.0: sparse global network alignment as a special case of quadratic assignment
- Algorithms for drug sensitivity prediction
- An efficient exact algorithm for triangle listing in large graphs
- A potential in silico antibody-antigen based diagnostic test for precise identification of \textit{Acinetobacter baumannii}
- Computational studies on Alzheimer's disease associated pathways and regulatory patterns using microarray gene expression and network data: revealed association with aging and other diseases
- Network diffusion with centrality measures to identify disease-related genes
- A fast prize-collecting Steiner forest algorithm for functional analyses in biological networks
- Protein-protein interactions can be predicted using coiled coil co-evolution patterns
- Response of Lyapunov exponents to diffusion state of biological networks
- graph
- Natalie
- Network embedding: taxonomies, frameworks and applications
- Inferring pattern generators on networks
- Cytoscape
- Prioritization of candidate genes through Boolean networks
- Four algorithms to solve symmetric multi-type non-negative matrix tri-factorization problem
- Random-walk based approximate \(k\)-nearest neighbors algorithm for diffusion state distance
- An improved graph Laplacian regularization method for identifying biomarkers of Alzheimer's disease
- NetMix2: unifying network propagation and altered subnetworks
- ProTranslator: zero-shot protein function prediction using textual description
- Structured hierarchical models for probabilistic inference from perturbation screening data
- TFisher: a powerful truncation and weighting procedure for combining \(p\)-values
- limma
- GO-TermFinder
- A new centrality measure of nodes in multilayer networks under the framework of tensor computation
- Gene expression and protein-protein interaction data for identification of colon cancer related genes using \(f\)-information measures
- Massive datasets and machine learning for computational biomedicine: trends and challenges
- A survey of computational methods in protein-protein interaction networks
- fabp4 is central to eight obesity associated genes: a functional gene network-based polymorphic study
- Human dopamine receptors interaction network (DRIN): a systems biology perspective on topology, stability and functionality of the network
- CFinder
- Pengines
- BioNet
- KEGG
- GENECODIS
- BDAGL
- On the robustness of the generalized fused Lasso to prior specifications
- Linked data for life sciences
- A novel graph clustering method with a greedy heuristic search algorithm for mining protein complexes from dynamic and static PPI networks
- Local search for constrained graph clustering in biological networks
- Reactome
- STITCH
- I-TASSER
- DAVID
- ROAST
- BioGRID
- PreSPI
- WebGestalt
- Finding gastric cancer related genes and clinical biomarkers for detection based on gene-gene interaction network
- HTSanalyzeR
- GOLEM
- Advances in integrative statistics for logic programming
- UniProt
- IntAct
- TFisher
- proSQLite
- ClueGO
- PANTHER
- GCTA
- PubChem
- CentiServer
- DrugBank
- DrugE-Rank
- DNRLMF-MDA
- SDTNBI
- ClusterViz
- Bio2RDF
- Real
- plml
- TM4
- VaxiJen
- MATHT
- TopHat-Fusion
- miTarget
- FunCoup
- DNMAD
- Frustratometer
- DisGeNET
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