limma
From MaRDI portal
Limma
Cited in
(only showing first 100 items - show all)- Improved biclustering of microarray data demonstrated through systematic performance tests
- DESMAN
- renv
- MatrixLMnet
- SummarizedExperiment
- DESeq2
- Statistical analysis of microbiome data with R
- Robust estimation of the parameters of \(g\)-\textit{and}-\(h\) distributions, with applications to outlier detection
- Bioconductor
- Bayesian estimation of differential transcript usage from RNA-seq data
- rattle
- A mixed integer programming-based global optimization framework for analyzing gene expression data
- A systems biology approach to understanding alcoholic liver disease molecular mechanism: the development of static and dynamic models
- MATHT: a web server for comprehensive transcriptome data analysis
- mixfdr
- beadarray
- gaga
- gcrma
- edgeR
- Scanalyze
- DEGseq
- FSelector
- Benchmark for filter methods for feature selection in high-dimensional classification data
- SJava
- affy
- EBarrays
- SAM
- Integrative analysis of immune microenvironment-related CeRNA regulatory axis in gastric cancer
- A semiparametric mixture method for local false discovery rate estimation from multiple studies
- A statistical perspective on the challenges in molecular microbial biology
- casper
- Sparse matrix linear models for structured high-throughput data
- corpor
- \texttt{EBADIMEX}: an empirical Bayes approach to detect joint differential expression and methylation and to classify samples
- Test-statistic correlation and data-row correlation
- BaySeq
- DEseq
- EDAseq
- RUVseq
- An empirical Bayes change-point model for transcriptome time-course data
- SIMAGE
- Onto-Tools
- maSigPro
- Robust estimator of the correlation matrix with sparse Kronecker structure for a high-dimensional matrix-variate
- Mutoss
- Identification of metabolism-associated pathways and genes involved in male and female liver cancer patients
- Assessing genome-wide significance for the detection of differentially methylated regions
- \texttt{MLML2R}: an R package for maximum likelihood estimation of DNA methylation and hydroxymethylation proportions
- siggenes
- QuasiSeq
- Epi
- Flexible estimation of a semiparametric two-component mixture model with one parametric component
- No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data
- FatiGO
- RankGene
- Statistical methods for the analysis of high-throughput data based on functional profiles derived from the Gene Ontology
- caTools
- GOTM
- GOToolBox
- TopKLists
- ShrinkBayes
- Voom
- goTools
- PyGtk
- propr
- Knorm
- ClassComparison
- Structure learning in nested effects models
- DoubleExpSeq
- DiffSplice
- TopHat
- RSEM
- EBSeq
- DAVID
- PROPER
- Rsubread
- featureCounts
- NBC
- csaw
- CGHcall
- Statistics and data analysis for microarrays using R and Bioconductor. With CD-ROM.
- Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping
- Robust hyperparameter estimation protects against hypervariable genes and improves power to detect differential expression
- Significance tests to identify regulated proteins based on a large number of small samples
- \textit{A priori}, \textit{de novo} mathematical exploration of gene expression mechanism via regression viewpoint with briefly cataloged modeling antiquity
- Scotty
- ChIPOTle
- graphite
- saa
- GO.db
- verification
- diffHic
- logcondens.mode
- FastAnnotator
- Transcriptator
- MISSEL
- Minfi
- GTK+
- PresenceAbsence
- Quality control and low-level statistical analysis of Illumina BeadArrays
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