BM-Map: Bayesian Mapping of Multireads for Next-Generation Sequencing Data

DOI10.1111/j.1541-0420.2011.01605.xzbMath1266.92049WikidataQ33881427 ScholiaQ33881427MaRDI QIDQ2893378

Yuan Yuan, Yuan Ji, Qiong Zhang, Kam-Wah Tsui, Yanxun Xu, Shoudan Liang, Clift Jun. Norris, Han Liang

Publication date: 20 June 2012

Published in: Biometrics (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc3190637

zbMATH Keywords

data augmentation; transcriptome; RNA-seq; read alignment; short reads; solexa sequencing

Mathematics Subject Classification ID

62P10: Applications of statistics to biology and medical sciences; meta analysis

62F15: Bayesian inference

92C40: Biochemistry, molecular biology

92D10: Genetics and epigenetics

92-08: Computational methods for problems pertaining to biology

92-04: Software, source code, etc. for problems pertaining to biology

Uses Software

• Soap
• BM-map

Cites Work

• Methods for allocating ambiguous short-reads
• Model-Based Quality Assessment and Base-Calling for Second-Generation Sequencing Data
• The Calculation of Posterior Distributions by Data Augmentation