Bismark
From MaRDI portal
Cited in
(66)- ChromaClique
- intePareto
- AUGUSTUS
- GATK
- HiTEC
- FASTX
- Trimmomatic
- BSgenome
- Gviz
- HMM-DM: identifying differentially methylated regions using a hidden Markov model
- TFBSTools
- Error correction in methylation profiling from NGS bisulfite protocols
- Comparative assessment of alignment algorithms for NGS data: features, considerations, implementations, and future
- sva
- HIVE-hexagon
- methylKit
- BS Seeker
- BSmooth
- PASS-bis
- BISMA
- Bisulfighter
- RRBSMAP
- DMAP
- MOABS
- SAAP-RRBS
- COHCAP
- BSMAP
- gage
- Tabix
- systemPipeR
- QuasR
- ChromHMM
- GenomicRanges
- Bowtie 2
- mrsFAST
- CUSHAW
- Socrates
- MAP-RSeq
- Pash
- CAP-miRSeq
- PSAR-Align
- BatMeth
- PePr
- MethylCoder
- Computational genomics with R. With the assistance of Verdan Franke, Bora Uyar and Jonathan Ronen
- Rqc
- Rsamtools
- BiocManager
- compGenomRData
- genomation
- ODIN
- gmapR
- normr
- deFuse
- GISTIC2.0
- MAnorm
- GenomicAlignments
- Rbowtie
- Trim Galore
- rGADEM
- rGREAT
- MethylSeekR
- BiSeq
- iClusterPlus
- Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data
- ART
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