Error correction in methylation profiling from NGS bisulfite protocols

DOI10.1007/978-3-319-59826-0_8MaRDI QIDQ3305529zbMATH OpenOpenAlexFDO

Authors Guillermo Barturen, Jose Oliver, Michael Hackenberg

Publication date 7 August 2020

Published in Algorithms for Next-Generation Sequencing Data (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-319-59826-0_8

zbMATH Keywords

bisulfite conversionmethylation contextsmethylation levelsoriginal methylation statuswhole-genome bisulfite sequencing (WGBS)

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

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Describes a project that uses

Uses Software

• GATK
• FastQC
• BS Seeker
• BSmooth
• mrsFAST
• Samtools
• FASTX
• Trimmomatic
• Cutadapt
• VarScan
• Bowtie 2
• Bismark
• BSMAP
• MethylCoder

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