A semi-parametric Bayesian approach for detection of gene expression heterosis with RNA-seq data

DOI10.1080/02664763.2021.2004581MaRDI QIDQ5058236zbMATH OpenOpenAlexFDO

Authors Ran Bi, Peng Liu

Publication date 19 December 2022

Published in Journal of Applied Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1080/02664763.2021.2004581

zbMATH Keywords

MCMCRNA-seqDirichlet processBayesian FDRgene expression heterosissemi-parametric Bayesian

Mathematics Subject Classification ID

Applications of statistics (62Pxx)

Cites work

• scientific article; zbMATH DE number 720689 (Why is no real title available?)
• A Bayesian Mixture Model for Differential Gene Expression
• A semi-parametric Bayesian approach for differential expression analysis of RNA-seq data
• Detecting differential gene expression with a semiparametric hierarchical mixture method
• Empirical Bayes analysis of RNA-seq data for detection of gene expression heterosis
• Estimating Normal Means with a Dirichlet Process Prior
• Estimation and testing of gene expression heterosis
• Ferguson distributions via Polya urn schemes
• Inference from iterative simulation using multiple sequences
• Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments
• Markov chains for exploring posterior distributions. (With discussion)
• Modelling heterogeneity with and without the Dirichlet process
• New proof to Somos's Dedekind eta-function identities of level 10
• Slice sampling mixture models

Cited in

(2)

• Detection of differentially expressed genes in discrete single‐cell RNA sequencing data using a hurdle model with correlated random effects
• Fully Bayesian analysis of allele-specific RNA-seq data

Describes a project that uses

Uses Software

• DEseq
• edgeR
• Bioconductor

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