A semi-parametric Bayesian approach for differential expression analysis of RNA-seq data
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Cites work
- scientific article; zbMATH DE number 720689 (Why is no real title available?)
- A Bayesian Mixture Model for Differential Gene Expression
- A Bayesian analysis of some nonparametric problems
- Adaptive Rejection Sampling for Gibbs Sampling
- An optimal test with maximum average power while controlling FDR with application to RNA-seq data
- Detecting differential gene expression with a semiparametric hierarchical mixture method
- Estimating Normal Means with a Dirichlet Process Prior
- Ferguson distributions via Polya urn schemes
- Markov chains for exploring posterior distributions. (With discussion)
- Mixtures of Dirichlet processes with applications to Bayesian nonparametric problems
- Modelling heterogeneity with and without the Dirichlet process
- Nonparametric Bayesian data analysis
- Sampling-Based Approaches to Calculating Marginal Densities
- Slice sampling mixture models
- Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of Images
- The \(L_{1}\)-consistency of Dirichlet mixtures in multivariate Bayesian density estimation
Cited in
(25)- Bayesian modeling of MPSS data: gene expression analysis of bovine \textit{salmonella} infection
- Bayesian nonparametric monotone regression
- Large scale maximum average power multiple inference on time-course count data with application to RNA-seq analysis
- Empirical Bayes analysis of RNA-seq data for detection of gene expression heterosis
- HmmSeq: a hidden Markov model for detecting differentially expressed genes from RNA-seq data
- Combining single and paired end RNA-seq data for differential expression analyses
- Bayesian estimation of differential transcript usage from RNA-seq data
- No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data
- Detecting differentially expressed genes with RNA-seq data using backward selection to account for the effects of relevant covariates
- Hierarchical modeling and differential expression analysis for RNA-seq experiments with inbred and hybrid genotypes
- Inference of large modified Poisson-type graphical models: application to RNA-seq data in childhood atopic asthma studies
- Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates
- Bayesian analysis of RNA-Seq data using a family of negative binomial models
- Fully Bayesian analysis of allele-specific RNA-seq data
- Improved variational Bayes inference for transcript expression estimation
- BNP-seq: Bayesian nonparametric differential expression analysis of sequencing count data
- A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data
- What if we ignore the random effects when analyzing RNA-seq data in a multifactor experiment
- Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data
- A two-stage Poisson model for testing RNA-Seq data
- A semi-parametric Bayesian approach for detection of gene expression heterosis with RNA-seq data
- Modifying SAMseq to account for asymmetry in the distribution of effect sizes when identifying differentially expressed genes
- Empirical Bayes analysis of RNA sequencing experiments with auxiliary information
- The NBP negative binomial model for assessing differential gene expression from RNA-Seq
- Contrastive latent variable modeling with application to case-control sequencing experiments
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