The NBP negative binomial model for assessing differential gene expression from RNA-Seq
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Publication:458211
DOI10.2202/1544-6115.1637zbMATH Open1296.92026OpenAlexW1545338101WikidataQ56978590 ScholiaQ56978590MaRDI QIDQ458211FDOQ458211
Authors: Yanming Di, Daniel W. Schafer, Jason S. Cumbie, Jeff H. Chang 
Publication date: 7 October 2014
Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.2202/1544-6115.1637
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Cited In (18)
- Kinetic Foundation of the Zero-Inflated Negative Binomial Model for Single-Cell RNA Sequencing Data
- Uniformly consistently estimating the proportion of false null hypotheses via Lebesgue-Stieltjes integral equations
- A two-stage Poisson model for testing RNA-Seq data
- Shrinkage of dispersion parameters in the binomial family, with application to differential exon skipping
- Empirical likelihood tests for nonparametric detection of differential expression from RNA-seq data
- Simultaneous inference of gene isoform expression for RNA sequencing data
- Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates
- Modifying SAMseq to account for asymmetry in the distribution of effect sizes when identifying differentially expressed genes
- Modeling overdispersion heterogeneity in differential expression analysis using mixtures
- Detecting differentially expressed genes with RNA-seq data using backward selection to account for the effects of relevant covariates
- Bayesian analysis of RNA-Seq data using a family of negative binomial models
- No counts, no variance: allowing for loss of degrees of freedom when assessing biological variability from RNA-seq data
- Single-gene negative binomial regression models for RNA-seq data with higher-order asymptotic inference
- BNP-seq: Bayesian nonparametric differential expression analysis of sequencing count data
- A sparse negative binomial classifier with covariate adjustment for RNA-seq data
- Sample size calculations for the differential expression analysis of RNA-seq data using a negative binomial regression model
- Pathway analysis for RNA-seq data using a score-based approach
- An optimal test with maximum average power while controlling FDR with application to RNA-seq data
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