A Bayesian Model for Cross-Study Differential Gene Expression

DOI10.1198/JASA.2009.AP07611zbMATH Open1205.62182OpenAlexW2045119066WikidataQ34362351 ScholiaQ34362351MaRDI QIDQ3069867FDOQ3069867

Robert B. Scharpf, Andrew B. Nobel, Håkon Tjelmeland, Giovanni Parmigiani

Publication date: 1 February 2011

Published in: Journal of the American Statistical Association (Search for Journal in Brave)

Full work available at URL: https://biostats.bepress.com/cgi/viewcontent.cgi?article=1158&context=jhubiostat

zbMATH Keywords

differential expressiongene expressionBayesian hierarchical modelmultiple studiesBayesian meta-analysis

Mathematics Subject Classification ID

Asymptotic properties of parametric estimators (62F12) Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Cited In (9)

• An empirical Bayes' approach to joint analysis of multiple microarray gene expression studies
• Detecting Differentially Expressed Genes in Microarrays Using Bayesian Model Selection
• Identifying Differentially Expressed Genes in Meta-Analysis via Bayesian Model-Based Clustering
• On integrating multi-experiment microarray data
• The NBP negative binomial model for assessing differential gene expression from RNA-Seq
• Improved variational Bayes inference for transcript expression estimation
• Development of a tissue augmented Bayesian model for expression quantitative trait loci analysis
• Bayesian–frequentist hybrid model with application to the analysis of gene copy number changes
• Bayesian latent hierarchical model for transcriptomic meta-analysis to detect biomarkers with clustered meta-patterns of differential expression signals

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