Detecting Differentially Expressed Genes in Microarrays Using Bayesian Model Selection
DOI10.1198/016214503000224zbMATH Open1041.62090OpenAlexW1971289666MaRDI QIDQ4468461FDOQ4468461
Authors: Hemant Ishwaran, J. Sunil Rao 
Publication date: 10 June 2004
Published in: Journal of the American Statistical Association (Search for Journal in Brave)
Full work available at URL: http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.385.5908
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heteroscedasticityfalse discovery rateridge regressionshrinkagerobustnessweighted regressionmicroarraysadaptivenessfalse nondiscovery rateBayesian analysis of variancevariance stabilizing transform
Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Ridge regression; shrinkage estimators (Lasso) (62J07) Analysis of variance and covariance (ANOVA) (62J10) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)
Cited In (47)
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- Bayesian accelerated failure time models based on penalized mixtures of Gaussians: regularization and variable selection
- Wavelet-based noise reduction by joint statistical modeling of cDNA microarray images
- The correlation of gene expression and co-regulated gene patterns in characteristic KEGG pathways
- Something Borrowed, Something New: Precise Prediction of Outcomes from Diverse Genomic Profiles
- A Bayesian Model for Cross-Study Differential Gene Expression
- Bayesian approaches to variable selection: a comparative study from practical perspectives
- Latent theme dictionary model for finding co-occurrent patterns in process data
- Bayesian adaptive selection of basis functions for functional data representation
- Bayesian estimation of sparse signals with a continuous spike-and-slab prior
- On wavelet-based methods for noise reduction of cDNA microarray images
- A Bayesian general linear modeling approach to cortical surface fMRI data analysis
- An empirical Bayesian approach for identifying differential coexpression in high-throughput experiments
- Particle EM for variable selection
- Identifying differentially expressed genes in microarray experiments with model-based variance estimation
- Bayesian Classification and Non‐Bayesian Label Estimation via EM Algorithm to Identify Differentially Expressed Genes: a Comparative Study
- Bayesian model selection for logistic regression models with random intercept
- Spike and slab variable selection: frequentist and Bayesian strategies
- What belongs where? Variable selection for zero-inflated count models with an application to the demand for health care
- Identifying Differentially Expressed Genes in Meta-Analysis via Bayesian Model-Based Clustering
- A Bayesian model averaging approach for observational gene expression studies
- More on the inadmissibility of step-up
- Significance analysis of microarrays applied to the ionizing radiation response
- Shrinkage estimation of effect sizes as an alternative to hypothesis testing followed by estimation in high-dimensional biology: applications to differential gene expression
- Bayesian analysis of comparative microarray experiments by model averaging
- Bayesian Modeling of Differential Gene Expression
- AN IN-DEPTH LOOK AT HIGHEST POSTERIOR MODEL SELECTION
- An Expectation Conditional Maximization Approach for Gaussian Graphical Models
- A smooth version of the step-up procedure for multiple tests of hypotheses
- A graph Laplacian prior for Bayesian variable selection and grouping
- Empirical Bayes analysis of unreplicated microarray data
- A new class of mixture models for differential gene expression in DNA microarray data
- Joint adaptive mean-variance regularization and variance stabilization of high dimensional data
- Bayesian variable selection in quantile regression with random effects: an application to Municipal Human Development Index
- Bayesian factor models for the detection of coherent patterns in gene expression data
- Bayesian Approaches to Shrinkage and Sparse Estimation
- Bayesian Models for Gene Expression With DNA Microarray Data
- Tournament screening cum EBIC for feature selection with high-dimensional feature spaces
- Polynomial nonlinear spatio‐temporal integro‐difference equation models
- Bayesian semiparametric analysis for two-phase studies of gene-environment interaction
- A Default Bayesian Hypothesis Test for ANOVA Designs
- The Median probability model and correlated variables
- Hierarchical Bayesian meta-analysis models for cross-platform microarray studies
- Consistency of spike and slab regression
- A new multiple testing method in the dependent case
- Parsimonious Model Averaging With a Diverging Number of Parameters
- Clustering gene expression profile data by selective shrinkage
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