Hierarchical Bayesian meta-analysis models for cross-platform microarray studies

DOI10.1080/02664760802562480MaRDI QIDQ5123403zbMATH OpenOpenAlexFDO

Authors Erin M. Conlon, B. L. Postier, Barbara A. Methé, K. P. Nevin, Derek R. Lovley

Publication date 28 September 2020

Published in Journal of Applied Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1080/02664760802562480

zbMATH Keywords

Bayesian statisticsdeviance information criterionMarkov chain Monte Carlometa-analysismicroarray datamultiple platform

Mathematics Subject Classification ID

Statistics (62-XX)

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Cites work

• A Bayesian Mixture Model for Differential Gene Expression
• A Direct Approach to False Discovery Rates
• A Laplace mixture model for identification of differential expression in microarray experiments
• A Statistical Framework for Expression-Based Molecular Classification in Cancer
• Bayesian analysis of comparative microarray experiments by model averaging
• Bayesian Measures of Model Complexity and Fit
• Bayesian Models for Gene Expression With DNA Microarray Data
• Detecting differential gene expression with a semiparametric hierarchical mixture method
• Detecting Differentially Expressed Genes in Microarrays Using Bayesian Model Selection
• Empirical Bayes Analysis of a Microarray Experiment
• Hierarchical Bayes models for cDNA microarray gene expression
• scientific article; zbMATH DE number 4090552 (Why is no real title available?)
• scientific article; zbMATH DE number 720689 (Why is no real title available?)
• scientific article; zbMATH DE number 1750180 (Why is no real title available?)
• Identifying Differentially Expressed Genes in Meta-Analysis via Bayesian Model-Based Clustering
• Monte Carlo strategies in scientific computing
• Operating Characteristics and Extensions of the False Discovery Rate Procedure
• Significance analysis of microarrays applied to the ionizing radiation response
• Spike and Slab Gene Selection for Multigroup Microarray Data
• Statistical analysis of microarray data: a Bayesian approach

Cited in

(8)

• Estimating a common covariance matrix for network meta-analysis of gene expression datasets in diffuse large B-cell lymphoma
• Bayesian latent hierarchical model for transcriptomic meta-analysis to detect biomarkers with clustered meta-patterns of differential expression signals
• An empirical Bayes' approach to joint analysis of multiple microarray gene expression studies
• On integrating multi-experiment microarray data
• Bayesian identification of differential gene expression induced by metals in human bronchial epithelial cells
• Integration of survival data from multiple studies
• An adaptively weighted statistic for detecting differential gene expression when combining multiple transcriptomic studies
• The importance of distinct modeling strategies for gene and gene-specific treatment effects in hierarchical models for microarray data

Describes a project that uses

Uses Software

• TM4
• ArrayExpress
• WinBUGS
• SAM

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