Bayesian state-space modeling in gene expression data analysis: an application with biomarker prediction

DOI10.1016/J.MBS.2018.08.011MaRDI QIDQ669073zbMATH OpenOpenAlexWikidataFDO

Authors Atanu Bhattacharjee, Gajendra K. Vishwakarma, Abin Thomas

Publication date 20 March 2019

Published in Mathematical Biosciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.mbs.2018.08.011

zbMATH Keywords

Gibbs samplingMCMC algorithmgene expression predictionvariance covariance structure

Mathematics Subject Classification ID

Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40)

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Cites work

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• scientific article; zbMATH DE number 3046453 (Why is no real title available?)
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• Mixtures of Dirichlet processes with applications to Bayesian nonparametric problems
• Modeling Markers of Disease Progression by a Hidden Markov Process: Application to Characterizing CD4 Cell Decline
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• Prediction of U.S. Cancer Mortality Counts Using Semiparametric Bayesian Techniques
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Cited in

(11)

• Censored imputation of time to event outcome through survival proximity score method
• Classification algorithm for high-dimensional protein markers in time-course data
• Application of state-space model with skew-\(t\) measurement noise to blood test value prediction
• Bayesian state space models for dynamic genetic network construction across multiple tissues
• Handling missingness value on jointly measured time-course and time-to-event data
• Dynamic logistic state space prediction model for clinical decision making
• Time-course data prediction for repeatedly measured gene expression
• A novel matched-pairs feature selection method considering with tumor purity for differential gene expression analyses
• Bayesian state space models for inferring and predicting temporal gene expression profiles
• A weight function method for selection of proteins to predict an outcome using protein expression data
• Joint modeling of longitudinal and time-to-event data on multivariate protein biomarkers

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