A weight function method for selection of proteins to predict an outcome using protein expression data

DOI10.1016/j.cam.2021.113465zbMath1461.62195OpenAlexW3128785508MaRDI QIDQ2656115

Abin Thomas, Gajendra K. Vishwakarma, Atanu Bhattacharjee

Publication date: 10 March 2021

Published in: Journal of Computational and Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.cam.2021.113465

zbMATH Keywords

resamplingregularisationfilter methodwrapper method

Mathematics Subject Classification ID

Inference from stochastic processes and prediction (62M20) Applications of statistics to biology and medical sciences; meta analysis (62P10) Sampling theory, sample surveys (62D05) Biochemistry, molecular biology (92C40)

Uses Software

• rda
• glmnet
• pROC

Cites Work

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• Bayesian state-space modeling in gene expression data analysis: an application with biomarker prediction
• Survival analysis with correlated endpoints. Joint frailty-copula models
• Joint modeling of longitudinal and time-to-event data on multivariate protein biomarkers
• Comparison of Discrimination Methods for the Classification of Tumors Using Gene Expression Data
• Selection bias in gene extraction on the basis of microarray gene-expression data
• A Bayesian approach with generalized ridge estimation for high-dimensional regression and testing
• Regularization and Variable Selection Via the Elastic Net
• Ridge Regression: Biased Estimation for Nonorthogonal Problems
• Efficient quadratic regularization for expression arrays

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