Selection bias in gene extraction on the basis of microarray gene-expression data
DOI10.1073/PNAS.102102699zbMATH Open1034.92013OpenAlexW2107956883WikidataQ30690335 ScholiaQ30690335MaRDI QIDQ4547711FDOQ4547711
Authors: Christophe Ambroise, Geoffrey J. McLachlan
Publication date: 11 September 2002
Published in: Proceedings of the National Academy of Sciences (Search for Journal in Brave)
Full work available at URL: http://www.pnas.org/content/vol99/issue10/#STATISTICS
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- scientific article; zbMATH DE number 2232754
Applications of statistics to biology and medical sciences; meta analysis (62P10) Medical applications (general) (92C50)
Cites Work
Cited In (77)
- Stable classification with applications to microarray data
- Title not available (Why is that?)
- Bayesian variable selection in multinomial probit model for classifying high-dimensional data
- Class prediction and gene selection for DNA microarrays using regularized sliced inverse regression
- Selecting Differentially Expressed Genes from Microarray Experiments
- Classification by ensembles from random partitions of high-dimensional data
- Projective inference in high-dimensional problems: prediction and feature selection
- Comparison of Bayesian predictive methods for model selection
- A very fast algorithm for matrix factorization
- Bayesian Classification of Tumours by Using Gene Expression Data
- Feature selection in omics prediction problems using cat scores and false nondiscovery rate control
- Hybrid feature selection algorithm using symmetrical uncertainty and a harmony search algorithm
- Statistical methods for the selection of genes with discriminating ability in classification of tumors
- Functional data analysis in shape analysis
- Multi-class tumor classification by discriminant partial least squares using microarray gene expression data and assessment of classification models
- Selection bias in working with the top genes in supervised classification of tissue samples
- Supervised learning from microarray data
- A network-based feature selection approach to identify metabolic signatures in disease
- On identifying marker genes from gene expression data in a neural framework through online feature analysis
- Stability selection for Lasso, ridge and elastic net implemented with AFT models
- Methods and Applications of Artificial Intelligence
- Variable selection for binary classification in large dimensions: comparisons and application to microarray data
- A model-based dimension reduction approach to classification of gene expression data
- Discrimination and scoring using small sets of genes for two-sample microarray data
- A new framework for identifying differentially expressed genes
- Correcting the estimated level of differential expression for gene selection bias: application to a microarray study
- Multiclass classification and gene selection with a stochastic algorithm
- Consensus analysis of multiple classifiers using non-repetitive variables: diagnostic application to microarray gene expression data
- Low rank updated LS-SVM classifiers for fast variable selection
- Asymmetric influence measure for high dimensional regression
- Sample size determination for training cancer classifiers from microarray and RNA-seq data
- Application of a mixture model for determining the cutoff threshold for activity in high-throughput screening
- An extensive comparison of recent classification tools applied to microarray data
- High-dimensional variable selection via low-dimensional adaptive learning
- Hybrid particle swarm optimization and tabu search approach for selecting genes for tumor classification using gene expression data
- On partial least squares dimension reduction for microarray-based classification: a simulation study
- Sparse regression and support recovery with \(\mathbb{L}_2\)-boosting algorithms
- Stepwise feature selection using generalized logistic loss
- Comparing the characteristics of gene expression profiles derived by univariate and multivariate classification methods
- On selection biases with prediction rules formed from gene expression data
- Cross‐validation and peeling strategies for survival bump hunting using recursive peeling methods
- Exploiting scale-free information from expression data for cancer classification
- Gene selection and prediction for cancer classification using support vector machines with a reject option
- Correlation and variable importance in random forests
- Gene selection via a new hybrid ant colony optimization algorithm for cancer classification in high-dimensional data
- Combining Nearest Neighbor Classifiers Versus Cross-Validation Selection
- An overview of recent developments in genomics and associated statistical methods
- Multi-class clustering and prediction in the analysis of microarray data
- A Bayesian approach to nonlinear probit gene selection and classification
- Markov blanket-embedded genetic algorithm for gene selection
- A multilevel tabu search algorithm for the feature selection problem in biomedical data
- Pre-validation and inference in microarrays
- Variable selection in kernel Fisher discriminant analysis by means of recursive feature elimina\-tion
- A comparison of regularization methods applied to the linear discriminant function with high-dimensional microarray data
- Classifying Gene Expression Profiles from Pairwise mRNA Comparisons
- Bias-corrected hierarchical Bayesian classification with a selected subset of high-dimensional features
- A weight function method for selection of proteins to predict an outcome using protein expression data
- Beyond support in two-stage variable selection
- Multiclass cancer classification by support vector machines with class-wise optimized genes and probability estimates
- A permutation test approach to the choice of sizekfor the nearest neighbors classifier
- Class prediction by nearest shrunken centroids, with applications to DNA microarrays.
- Title not available (Why is that?)
- Title not available (Why is that?)
- Efficient estimation and correction of selection-induced bias with order statistics
- A Festschrift for Geoff McLachlan
- A method for constructing a confidence bound for the actual error rate of a prediction rule in high dimensions
- A method for avoiding bias from feature selection with application to naive Bayes classification models
- Systematic benchmarking of microarray data feature extraction and classification
- NONLINEAR PROBIT GENE CLASSIFICATION USING MUTUAL INFORMATION AND WAVELET-BASED FEATURE SELECTION
- Optimized variable selection via repeated data splitting
- Privacy preserving feature selection and multiclass classification for horizontally distributed data
- Performance of Gene Selection and Classification Methods in a Microarray Setting: A Simulation Study
- Open-set nearest shrunken centroid classification
- A novel feature selection scheme for high-dimensional data sets: four-staged feature selection
- Estimating prediction error in microarray classification: modifications of the 0.632+ bootstrap when \(n<p\)
- Statistical Inference Enables Bad Science; Statistical Thinking Enables Good Science
- Combining clustering of variables and feature selection using random forests
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