A Bayesian mixture model for chromatin interaction data

DOI10.1515/SAGMB-2014-0029MaRDI QIDQ2258449zbMATH OpenOpenAlexWikidataFDO

Authors Liang Niu, Shili Lin

Publication date 26 February 2015

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL https://www.degruyter.com/view/j/sagmb.2015.14.issue-1/sagmb-2014-0029/sagmb-2014-0029.xml?format=INT

zbMATH Keywords

Bayesian mixture modelChIA-PET

Mathematics Subject Classification ID

Bayesian inference (62F15) General biostatistics (92B15) Biochemistry, molecular biology (92C40)

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Cites work

• Inference from iterative simulation using multiple sequences

Cited in

(8)

• Bayesian hidden Markov models to identify RNA-protein interaction sites in PAR-CLIP
• An empirical Bayes approach for the identification of long-range chromosomal interaction from Hi-C data
• Statistical inference on three-dimensional structure of genome by truncated Poisson architecture model
• MDM
• Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations
• A Statistical Approach to Infer 3d Chromatin Structure
• Model-based distance embedding with applications to chromosomal conformation biology
• A random effect model for reconstruction of spatial chromatin structure

Describes a project that uses

Uses Software

• GPSeq
• DEseq
• edgeR
• Bioconductor
• R

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