A random effect model for reconstruction of spatial chromatin structure

DOI10.1111/BIOM.12544MaRDI QIDQ5347402zbMATHOpenAlexWikidataFDO

Authors Jincheol Park, Shili Lin

Publication date 23 May 2017

Published in Biometrics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1111/biom.12544

zbMATH Keywords

Hi-C datalooping3D architecturecorrelation between countsPoisson Random effect Architecture Model (PRAM)random effect modeling

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

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Cites work

• A Bayesian mixture model for chromatin interaction data
• Bayesian predictive information criterion for the evaluation of hierarchical Bayesian and empirical Bayes models
• Contemporary Bayesian Econometrics and Statistics

Cited in

(11)

• An empirical Bayes approach for the identification of long-range chromosomal interaction from Hi-C data
• Model-based chromosome recognition via hypotheses construction/verification
• Fast random algorithms for manifold based optimization in reconstructing 3D chromosomal structures
• Uncovering proximity of chromosome territories using classical algebraic statistics
• Inferring the three-dimensional structures of the X-chromosome during X-inactivation
• A Statistical Approach to Infer 3d Chromatin Structure
• Statistical inference on three-dimensional structure of genome by truncated Poisson architecture model
• Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations
• Modeling three-dimensional chromosome structures using gene expression data
• Statistical curve models for inferring 3D chromatin architecture
• Model-based distance embedding with applications to chromosomal conformation biology

Describes a project that uses

Uses Software

• BaySeq
• BayesDA
• MDM

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