A random effect model for reconstruction of spatial chromatin structure

DOI10.1111/BIOM.12544zbMATH Open1366.62237OpenAlexW2400255398WikidataQ39744022 ScholiaQ39744022MaRDI QIDQ5347402FDOQ5347402

Authors: Jincheol Park, Shili Lin 

Publication date: 23 May 2017

Published in: Biometrics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1111/biom.12544

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zbMATH Keywords

Hi-C datalooping3D architecturecorrelation between countsPoisson Random effect Architecture Model (PRAM)random effect modeling

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Cites Work

• A Bayesian mixture model for chromatin interaction data
• Bayesian predictive information criterion for the evaluation of hierarchical Bayesian and empirical Bayes models
• Contemporary Bayesian Econometrics and Statistics

Cited In (11)

• An empirical Bayes approach for the identification of long-range chromosomal interaction from Hi-C data
• Statistical inference on three-dimensional structure of genome by truncated Poisson architecture model
• Modeling three-dimensional chromosome structures using gene expression data
• Inferring the three-dimensional structures of the X-chromosome during X-inactivation
• Model-based chromosome recognition via hypotheses construction/verification
• Fast random algorithms for manifold based optimization in reconstructing 3D chromosomal structures
• Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations
• A Statistical Approach to Infer 3d Chromatin Structure
• Model-based distance embedding with applications to chromosomal conformation biology
• Uncovering proximity of chromosome territories using classical algebraic statistics
• Statistical curve models for inferring 3D chromatin architecture

Uses Software

• BaySeq
• BayesDA
• MDM

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