Fast random algorithms for manifold based optimization in reconstructing 3D chromosomal structures

DOI10.4310/CIS.2021.V21.N1.A1MaRDI QIDQ2662364zbMATH OpenOpenAlexFDO

Authors Duan Chen, Shaoyu Li, Xue Wang, Kelin Xia

Publication date 13 April 2021

Published in Communications in Information and Systems (Search for Journal in Brave)

Full work available at URL https://doi.org/10.4310/cis.2021.v21.n1.a1

zbMATH Keywords

chromosomal structuresfast algorithmsHi-C datamanifold based optimizationmathematical modelrandomized numerical linear algebra

Mathematics Subject Classification ID

Numerical mathematical programming methods (65K05) Applications of mathematical programming (90C90) Protein sequences, DNA sequences (92D20)

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• A hybrid stochastic interpolation and compression method for kernel matrices

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