An empirical Bayes approach for the identification of long-range chromosomal interaction from Hi-C data

DOI10.1101/497776MaRDI QIDQ2236692zbMATH OpenOpenAlexFDO

Authors Qi Zhang, Zheng Xu, Yutong Lai

Publication date 26 October 2021

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Copyright license Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International

Full work available at URL https://doi.org/10.1515/sagmb-2020-0026

zbMATH Keywords

empirical BayesepigeneticsHi-Cpeak identification

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10)

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Cites work

• A fast algorithm for matrix balancing
• A random effect model for reconstruction of spatial chromatin structure
• Computational statistics
• Discrete triangular distributions and non-parametric estimation for probability mass function
• Empirical Bayes Analysis of a Microarray Experiment
• Empirical Bayes deconvolution estimates
• Empirical null and false discovery rate inference for exponential families
• scientific article; zbMATH DE number 4153762 (Why is no real title available?)
• scientific article; zbMATH DE number 6122810 (Why is no real title available?)
• Large-Scale Simultaneous Hypothesis Testing

Cited in

(3)

• Proposing a novel community detection approach to identify cointeracting genomic regions
• Efficient and accurate detection of topologically associating domains from contact maps
• Translocation Detection from Hi-C Data via Scan Statistics

Describes a project that uses

Uses Software

• GeneCards
• GitHub

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